| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yjeF [H]
Identifier: 157368673
GI number: 157368673
Start: 476550
End: 477938
Strand: Direct
Name: yjeF [H]
Synonym: Spro_0426
Alternate gene names: 157368673
Gene position: 476550-477938 (Clockwise)
Preceding gene: 157368671
Following gene: 157368674
Centisome position: 8.75
GC content: 60.19
Gene sequence:
>1389_bases ATGCAACGTGCCGGTGAGGCTGCTTACATCCTGGCACGCGACCAGTACCCGGCCGCTCACCACTGGCTGGTGCTGTGTGG CCATGGCAACAATGGCGGCGACGGTTACGTGGTCGCCAGACTGGCAGCGGCGGCCGGTGTTAAGGTCAGTTTGATCGCCT GCGAAGGCACACGCCCACTGCCGCCCGAGGCCGCAGAAGCGCGACGGGCCTGGTTGGCCGCCGGTGGTGAAATTCATCCG GCTGACAGTCGTTGGCCGGAAGATAGTGATCTGATCATCGACGGCTTGCTTGGTACCGGGCTGAGTCGTGCGCCGCGTGC GCCATACGATGCGCTGATTGAAGCCGCGAACCGCAGCTGCGCACCGGTGATCGCACTTGATATTCCCTCGGGCTTGCTGG CCGAAAGCGGTGCTGTGCCTGGGGTGGTGATCCGCGCTTCGCACACTATGACGTTTATTGCCCTCAAACCGGGCTTATTA ACCGGTCAGGCCCGTGATTGGGTCGGGCAACTTCACCAGAGTACGCTAGGATTATCGGGTTGGCTGGCGAAGCAACCGAC ACAGATTCAGCGGCTTACTGCCGAGTCCCTGCCTCTGTGGCTGAAACCGCGTCGTCCGTGCTCGCATAAAGGTGAACAAG GGCGTTTGTTGGTGGTTGGCGGCGATCATGGTTTTGGCGGTGCGATACGCATGGCGGCAGAGGCGGCACTGCGCAGCGGT GCCGGATTGGTGCGAGTACTTACTCACATCGAGCATGTCGGGCCATTATTGACCGCCAGGCCTGAGCTGATGGTACAGCC TTTAAGTGACGAAACATTGCAGCAGGCGCTCGACTGGGCTGATGTACTGGTGGTGGGGCCGGGACTGGGTCAGGGCGAAT GGGGTAGGAATGCGCTGAAAGTATTGCAAGCCAGTGATAAACCGGCGTTATGGGACGCGGATGCGTTGAACTTGCTGGCA TTAAATCCCGAGAAGCGTCAGAATCGTGTGATTACCCCGCATCCTGGGGAGGCGGCACGCCTGCTGGGGTGCCGTACCGC CGAGATTGAGAGTGATCGCTTACTTGCAGTGCGTAAACTGGTGGCGCAATACGGTGGCATAGCCGTGCTGAAAGGTGCGG GCACGCTGATTGCCGACCAGTACGGCCAGATGGCGATCGCCGACGTCGGCAATGCCGGCATGGCCTCCGGCGGAATGGGC GATGTTTTGTCGGGTATCATCGGCGGTTTGCTGGGGCAAAAGCTCTCGCTGTATGATGCAGCCTGTGCTGGATGTGTGGC GCATGGCGCAGCCGCCGATCGCGTGGCGGCAAGACAAGGAATCAGGGGGATGCTGGCAAGTGACTTACTGCCGGAAATTC CTTATTACGTTAATCCTGAGTTGGCATAA
Upstream 100 bases:
>100_bases ATACTCCGCTAGTTTATCACACTCTGTCTGGTCTGCAGACTGGATCCGGCGGGCTGAAGCCAGCGCCGCTGCCTCGCTGG GGATTTCACTCTACCAACTG
Downstream 100 bases:
>100_bases ATAGAAACTATCGAATGAAAGAACTCGTTTTACCTCTGCCGGATGAGGCAGCGACTGTCGCACTGGGTGCCGTCTTGGCT AAGGCGTGCGATCGTGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MQRAGEAAYILARDQYPAAHHWLVLCGHGNNGGDGYVVARLAAAAGVKVSLIACEGTRPLPPEAAEARRAWLAAGGEIHP ADSRWPEDSDLIIDGLLGTGLSRAPRAPYDALIEAANRSCAPVIALDIPSGLLAESGAVPGVVIRASHTMTFIALKPGLL TGQARDWVGQLHQSTLGLSGWLAKQPTQIQRLTAESLPLWLKPRRPCSHKGEQGRLLVVGGDHGFGGAIRMAAEAALRSG AGLVRVLTHIEHVGPLLTARPELMVQPLSDETLQQALDWADVLVVGPGLGQGEWGRNALKVLQASDKPALWDADALNLLA LNPEKRQNRVITPHPGEAARLLGCRTAEIESDRLLAVRKLVAQYGGIAVLKGAGTLIADQYGQMAIADVGNAGMASGGMG DVLSGIIGGLLGQKLSLYDAACAGCVAHGAAADRVAARQGIRGMLASDLLPEIPYYVNPELA
Sequences:
>Translated_462_residues MQRAGEAAYILARDQYPAAHHWLVLCGHGNNGGDGYVVARLAAAAGVKVSLIACEGTRPLPPEAAEARRAWLAAGGEIHP ADSRWPEDSDLIIDGLLGTGLSRAPRAPYDALIEAANRSCAPVIALDIPSGLLAESGAVPGVVIRASHTMTFIALKPGLL TGQARDWVGQLHQSTLGLSGWLAKQPTQIQRLTAESLPLWLKPRRPCSHKGEQGRLLVVGGDHGFGGAIRMAAEAALRSG AGLVRVLTHIEHVGPLLTARPELMVQPLSDETLQQALDWADVLVVGPGLGQGEWGRNALKVLQASDKPALWDADALNLLA LNPEKRQNRVITPHPGEAARLLGCRTAEIESDRLLAVRKLVAQYGGIAVLKGAGTLIADQYGQMAIADVGNAGMASGGMG DVLSGIIGGLLGQKLSLYDAACAGCVAHGAAADRVAARQGIRGMLASDLLPEIPYYVNPELA >Mature_462_residues MQRAGEAAYILARDQYPAAHHWLVLCGHGNNGGDGYVVARLAAAAGVKVSLIACEGTRPLPPEAAEARRAWLAAGGEIHP ADSRWPEDSDLIIDGLLGTGLSRAPRAPYDALIEAANRSCAPVIALDIPSGLLAESGAVPGVVIRASHTMTFIALKPGLL TGQARDWVGQLHQSTLGLSGWLAKQPTQIQRLTAESLPLWLKPRRPCSHKGEQGRLLVVGGDHGFGGAIRMAAEAALRSG AGLVRVLTHIEHVGPLLTARPELMVQPLSDETLQQALDWADVLVVGPGLGQGEWGRNALKVLQASDKPALWDADALNLLA LNPEKRQNRVITPHPGEAARLLGCRTAEIESDRLLAVRKLVAQYGGIAVLKGAGTLIADQYGQMAIADVGNAGMASGGMG DVLSGIIGGLLGQKLSLYDAACAGCVAHGAAADRVAARQGIRGMLASDLLPEIPYYVNPELA
Specific function: Unknown
COG id: COG0063
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YjeF N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI119709830, Length=226, Percent_Identity=32.7433628318584, Blast_Score=77, Evalue=2e-14, Organism=Escherichia coli, GI1790609, Length=461, Percent_Identity=68.1127982646421, Blast_Score=631, Evalue=0.0, Organism=Caenorhabditis elegans, GI17554656, Length=279, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI21357759, Length=275, Percent_Identity=31.6363636363636, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017953 - InterPro: IPR000631 - InterPro: IPR004443 [H]
Pfam domain/function: PF01256 Carb_kinase; PF03853 YjeF_N [H]
EC number: NA
Molecular weight: Translated: 48319; Mature: 48319
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS01050 UPF0031_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRAGEAAYILARDQYPAAHHWLVLCGHGNNGGDGYVVARLAAAAGVKVSLIACEGTRPL CCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC PPEAAEARRAWLAAGGEIHPADSRWPEDSDLIIDGLLGTGLSRAPRAPYDALIEAANRSC CCCHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEHHHHCCCCCCCCCCHHHHHHHCCCCC APVIALDIPSGLLAESGAVPGVVIRASHTMTFIALKPGLLTGQARDWVGQLHQSTLGLSG CEEEEEECCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC WLAKQPTQIQRLTAESLPLWLKPRRPCSHKGEQGRLLVVGGDHGFGGAIRMAAEAALRSG CCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC AGLVRVLTHIEHVGPLLTARPELMVQPLSDETLQQALDWADVLVVGPGLGQGEWGRNALK CHHHHHHHHHHHHCHHHHCCCHHEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH VLQASDKPALWDADALNLLALNPEKRQNRVITPHPGEAARLLGCRTAEIESDRLLAVRKL HHHCCCCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH VAQYGGIAVLKGAGTLIADQYGQMAIADVGNAGMASGGMGDVLSGIIGGLLGQKLSLYDA HHHHCCEEEEECCCCEEHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH ACAGCVAHGAAADRVAARQGIRGMLASDLLPEIPYYVNPELA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQRAGEAAYILARDQYPAAHHWLVLCGHGNNGGDGYVVARLAAAAGVKVSLIACEGTRPL CCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC PPEAAEARRAWLAAGGEIHPADSRWPEDSDLIIDGLLGTGLSRAPRAPYDALIEAANRSC CCCHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEHHHHCCCCCCCCCCHHHHHHHCCCCC APVIALDIPSGLLAESGAVPGVVIRASHTMTFIALKPGLLTGQARDWVGQLHQSTLGLSG CEEEEEECCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC WLAKQPTQIQRLTAESLPLWLKPRRPCSHKGEQGRLLVVGGDHGFGGAIRMAAEAALRSG CCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC AGLVRVLTHIEHVGPLLTARPELMVQPLSDETLQQALDWADVLVVGPGLGQGEWGRNALK CHHHHHHHHHHHHCHHHHCCCHHEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH VLQASDKPALWDADALNLLALNPEKRQNRVITPHPGEAARLLGCRTAEIESDRLLAVRKL HHHCCCCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH VAQYGGIAVLKGAGTLIADQYGQMAIADVGNAGMASGGMGDVLSGIIGGLLGQKLSLYDA HHHHCCEEEEECCCCEEHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH ACAGCVAHGAAADRVAARQGIRGMLASDLLPEIPYYVNPELA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 7511774 [H]