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The map label for this gene is ydcR [C]

Identifier: 157368482

GI number: 157368482

Start: 262024

End: 263211

Strand: Direct

Name: ydcR [C]

Synonym: Spro_0233

Alternate gene names: 157368482

Gene position: 262024-263211 (Clockwise)

Preceding gene: 157368481

Following gene: 157368483

Centisome position: 4.81

GC content: 58.75

Gene sequence:

>1188_bases
ATGAACAGAGAAGGGTTACTCGCGCAGCGCATCGTAAAAGTAAAAAGCTCGGCAATTCGTGAATTGCTCAAGCACAGTAA
GATGGAAAACGTCATTTCGCTGGCGGGCGGCATCCCCTCTGATGCCCTGTTTGATTTCGAAGGCTTGAGCATCGCTACTC
ATCAGGCGATCACCGAGCAGCCGAAAAGCGCTTTCCAATATGGTTTGACCGAAGGCAGTCCGGTGCTGCGTGAGCGCATC
TGCGAACTGTGCGCCCAGCGTGGTGTTTCTGCCACTGCCGAAGAAGTGATGGTCACGGCCGGTTCCCAGCAGGCGCTGGA
TCTGGTGATGCGTGCCATCGTCAACCCGGGCGACGTGTTTGTGGTGGAGCGTCCGACCTATCTGGCGGCGTTACAGACGC
TGGAGCTGGCGGAAGCCAACATCATGTCGGTGTCGTCCGACAGCGATGGCATGGTGGTCGAAGAGCTGGCCGAACTGCTG
AAAACCCAGCGCATCAAGGGCGTGTATGTGGTGCCGAACTTCGGCAACCCAAGCGGTATCACCCTGAGCGCACCGCGCCG
CGAACTGTTGGTGAAACTGGCGGCCGAGCACAATTTCCTGATCATCGAGGATGACCCGTACGGCGAACTGCGCTTTACCG
AAGAGCGCAACGCCACGCTGCACCAGATTTCCCAGCAGGTGCTGGGTCACACCGATAACATTATCTACACCTCGACCTTC
TCCAAGATCCTGGCACCGGGCCTGCGCCTGGGCTGGGCGATTTTGCCTGAGTTCCTGCTGCATAAAGTGGCGATCATCAA
GCAGGCTGCGGATCTGCATGCCAGCGCGCTGTCGCAGAGCATCGTCGAATGCTATCTGGGGCTGGATCGTCTGCCGGCGC
AGATCGAAAAGATCCGCGCGGCCTACAAGCACAAGGGTGAGATCCTGGCCGGGCTGGTGGAGCAAGAGCTGGGCGATCAC
ATCAGCTTCGATATGCCGAAGGGCGGTATGTTCCTGTGGGCGCGTTTCCGCCAGCCGTTTAACGCTACCGAATGGCTGAA
AACCACCCTGCAGCAGGGCGTGGTATTCGTGCCGGGGGAATACTTCTTCTCAGACAACCCGGATCGTTCGACCTTCCGCC
TGTCGTTCGCCACCGCGACCGAACAGCAAATGCAGGAAGCGGTCGCTCGACTGCGTCGTTCGCTGTAA

Upstream 100 bases:

>100_bases
TACGGGAGCCGCATTGTTAGCAAACGAAGCAGTTCGATCCGCTTATCTCGGTGGATAGTTTGTCCCAGTAACTAATAATA
ATCAGGAATGAGAAGAAGAA

Downstream 100 bases:

>100_bases
TACCCACGGCGGCGGGGCAGTTCTCCCTGCCGCCGACATCAAACCGCAATCTGCACTTCACTCTCCCGTCACACGGCTGT
CATCTGGCAGTTATATTTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNREGLLAQRIVKVKSSAIRELLKHSKMENVISLAGGIPSDALFDFEGLSIATHQAITEQPKSAFQYGLTEGSPVLRERI
CELCAQRGVSATAEEVMVTAGSQQALDLVMRAIVNPGDVFVVERPTYLAALQTLELAEANIMSVSSDSDGMVVEELAELL
KTQRIKGVYVVPNFGNPSGITLSAPRRELLVKLAAEHNFLIIEDDPYGELRFTEERNATLHQISQQVLGHTDNIIYTSTF
SKILAPGLRLGWAILPEFLLHKVAIIKQAADLHASALSQSIVECYLGLDRLPAQIEKIRAAYKHKGEILAGLVEQELGDH
ISFDMPKGGMFLWARFRQPFNATEWLKTTLQQGVVFVPGEYFFSDNPDRSTFRLSFATATEQQMQEAVARLRRSL

Sequences:

>Translated_395_residues
MNREGLLAQRIVKVKSSAIRELLKHSKMENVISLAGGIPSDALFDFEGLSIATHQAITEQPKSAFQYGLTEGSPVLRERI
CELCAQRGVSATAEEVMVTAGSQQALDLVMRAIVNPGDVFVVERPTYLAALQTLELAEANIMSVSSDSDGMVVEELAELL
KTQRIKGVYVVPNFGNPSGITLSAPRRELLVKLAAEHNFLIIEDDPYGELRFTEERNATLHQISQQVLGHTDNIIYTSTF
SKILAPGLRLGWAILPEFLLHKVAIIKQAADLHASALSQSIVECYLGLDRLPAQIEKIRAAYKHKGEILAGLVEQELGDH
ISFDMPKGGMFLWARFRQPFNATEWLKTTLQQGVVFVPGEYFFSDNPDRSTFRLSFATATEQQMQEAVARLRRSL
>Mature_395_residues
MNREGLLAQRIVKVKSSAIRELLKHSKMENVISLAGGIPSDALFDFEGLSIATHQAITEQPKSAFQYGLTEGSPVLRERI
CELCAQRGVSATAEEVMVTAGSQQALDLVMRAIVNPGDVFVVERPTYLAALQTLELAEANIMSVSSDSDGMVVEELAELL
KTQRIKGVYVVPNFGNPSGITLSAPRRELLVKLAAEHNFLIIEDDPYGELRFTEERNATLHQISQQVLGHTDNIIYTSTF
SKILAPGLRLGWAILPEFLLHKVAIIKQAADLHASALSQSIVECYLGLDRLPAQIEKIRAAYKHKGEILAGLVEQELGDH
ISFDMPKGGMFLWARFRQPFNATEWLKTTLQQGVVFVPGEYFFSDNPDRSTFRLSFATATEQQMQEAVARLRRSL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=388, Percent_Identity=30.6701030927835, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI33469970, Length=388, Percent_Identity=30.6701030927835, Blast_Score=176, Evalue=5e-44,
Organism=Escherichia coli, GI1787710, Length=377, Percent_Identity=26.525198938992, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1790797, Length=385, Percent_Identity=25.1948051948052, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788722, Length=348, Percent_Identity=25.2873563218391, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=343, Percent_Identity=24.7813411078717, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=478, Percent_Identity=24.6861924686192, Blast_Score=116, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6321929, Length=488, Percent_Identity=25.2049180327869, Blast_Score=112, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6321000, Length=236, Percent_Identity=30.0847457627119, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21356535, Length=391, Percent_Identity=24.5524296675192, Blast_Score=122, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 43781; Mature: 43781

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREGLLAQRIVKVKSSAIRELLKHSKMENVISLAGGIPSDALFDFEGLSIATHQAITEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHC
PKSAFQYGLTEGSPVLRERICELCAQRGVSATAEEVMVTAGSQQALDLVMRAIVNPGDVF
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCHHHHHHHHHHHCCCCCEE
VVERPTYLAALQTLELAEANIMSVSSDSDGMVVEELAELLKTQRIKGVYVVPNFGNPSGI
EEECCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
TLSAPRRELLVKLAAEHNFLIIEDDPYGELRFTEERNATLHQISQQVLGHTDNIIYTSTF
EECCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEHHH
SKILAPGLRLGWAILPEFLLHKVAIIKQAADLHASALSQSIVECYLGLDRLPAQIEKIRA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AYKHKGEILAGLVEQELGDHISFDMPKGGMFLWARFRQPFNATEWLKTTLQQGVVFVPGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHCCEEEECCC
YFFSDNPDRSTFRLSFATATEQQMQEAVARLRRSL
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNREGLLAQRIVKVKSSAIRELLKHSKMENVISLAGGIPSDALFDFEGLSIATHQAITEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHC
PKSAFQYGLTEGSPVLRERICELCAQRGVSATAEEVMVTAGSQQALDLVMRAIVNPGDVF
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCHHHHHHHHHHHCCCCCEE
VVERPTYLAALQTLELAEANIMSVSSDSDGMVVEELAELLKTQRIKGVYVVPNFGNPSGI
EEECCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
TLSAPRRELLVKLAAEHNFLIIEDDPYGELRFTEERNATLHQISQQVLGHTDNIIYTSTF
EECCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEHHH
SKILAPGLRLGWAILPEFLLHKVAIIKQAADLHASALSQSIVECYLGLDRLPAQIEKIRA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AYKHKGEILAGLVEQELGDHISFDMPKGGMFLWARFRQPFNATEWLKTTLQQGVVFVPGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHCCEEEECCC
YFFSDNPDRSTFRLSFATATEQQMQEAVARLRRSL
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]