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The map label for this gene is fimD1 [H]

Identifier: 157163761

GI number: 157163761

Start: 4550149

End: 4552740

Strand: Direct

Name: fimD1 [H]

Synonym: EcHS_A4543

Alternate gene names: 157163761

Gene position: 4550149-4552740 (Clockwise)

Preceding gene: 157163760

Following gene: 157163762

Centisome position: 97.99

GC content: 48.61

Gene sequence:

>2592_bases
TTGCATATTCGTAAGCATCGTTTGGCTGGTTTTTTTGTCCGGCTCTTTGTTGCCTGTGCTTTTGCCGCACAGGCACCTTT
GTCATCTGCCGAACTCTATTTTAACCCGCGTTTTTTAGCGGATGATCCCCAGGCTGTGGCTGATTTATCGCGTTTTGAAA
ATGGGCAAGAATTACCGCCAGGGACGTATCGTGTCGATATCTATTTGAATAATGGTTATATGGCAACGCGTGATGTCACA
TTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTTGCCAGTATGGGGCTGAATACGGC
TTCTGTCTCCGGTATGAATCTGCTGGCGGATGATGCCTGCGTGCCATTAACCTCAATGATCCATGACGCTACTGCGCATT
TAGATGTTGGTCAGCAGCGACTCAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCT
GAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGG
TAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGA
GTTATAACCGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATA
CCGTTACGTTCCCGGCTGACGCTGGGTGATGGTTATACTCAGGGCGATATTTTCGATGGTATTAACTTTCGCGGCGCACA
ATTGGCCTCAGATGACAATATGTTACCCGATAGCCAAAGAGGATTTGCCCCGGTGATCCACGGTATTGCTCGTGGTACTG
CACAGGTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATC
TATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTA
TTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGC
AGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAA
CTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGAC
GCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATG
AGTCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGT
CGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGC
TTATAACAAACGCGGGAAATTACAGCTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC
ATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGTTTAAATACTGCATTCGAAGATATCAACTGG
ACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTT
CAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACG
GTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGCTAT
GCCGGGGGAGGCGATGGAAATAGCGGAAGTACAGGCTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATAT
CGGTTACAGCCATAGCGATGATATTAAGCAGCTCTATTACGGAGTCAGCGGTGGGGTATTGGCTCATGCCAATGGCGTAA
CGCTGGGGCAGCCGTTAAACGAAACAGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACG
GGGGTGCGTACCGACTGGCGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAC
CAATACCCTGGCTGATAACGTCGATTTAGATAACGCGGTTGCTAACGTTGTTCCCACTCGTGGGGCGATCGTGCGAGCAG
AGTTTAAAGCGCGCGTTGGGATAAAACTGCTCATGACGCTAACCCACAATAATAAGCCGCTGCCGTTTGGGGCGATGGTG
ACATCAGAGAGTAGCCAGAGTAGCGGCATTGTTGCGGATAATGGTCAGGTTTACCTCAGCGGAATGCCTCTAGCGGGAAA
AGTTCAGGTGAAATGGGGAGAAGAGGAAAATGCTCACTGTGTCGCCAATTATCAACTGCCACCAGAGAGGCAGCAGCAGT
TATTAACCCAGCTATCAGCTGAATGTCGTTAA

Upstream 100 bases:

>100_bases
TTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAACCGGAGGAATAATGTCATATCTGAATTTAAGACTTT
ACCAGCGAAACACACAATGC

Downstream 100 bases:

>100_bases
GGGGGCGTGATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTGAGTCACGCTTTGGCTGCGGA
TAGCACGATTACTATCCGCG

Product: outer membrane usher protein fimD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVT
FNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPP
ELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDII
PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI
YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQ
LADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS
RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW
TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGY
AGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQT
GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMV
TSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPERQQQLLTQLSAECR

Sequences:

>Translated_863_residues
MHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVT
FNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPP
ELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDII
PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI
YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQ
LADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS
RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW
TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGY
AGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQT
GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMV
TSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPERQQQLLTQLSAECR
>Mature_863_residues
MHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVT
FNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPP
ELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDII
PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI
YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQ
LADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS
RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW
TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGY
AGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQT
GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMV
TSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPERQQQLLTQLSAECR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=863, Percent_Identity=98.7253765932793, Blast_Score=1762, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=857, Percent_Identity=49.3582263710618, Blast_Score=827, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=843, Percent_Identity=47.4495848161329, Blast_Score=794, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=875, Percent_Identity=37.3714285714286, Blast_Score=548, Evalue=1e-157,
Organism=Escherichia coli, GI1786332, Length=874, Percent_Identity=32.0366132723112, Blast_Score=413, Evalue=1e-116,
Organism=Escherichia coli, GI1788427, Length=833, Percent_Identity=29.2917166866747, Blast_Score=357, Evalue=1e-99,
Organism=Escherichia coli, GI87081778, Length=865, Percent_Identity=28.5549132947977, Blast_Score=274, Evalue=2e-74,
Organism=Escherichia coli, GI1789610, Length=828, Percent_Identity=24.3961352657005, Blast_Score=119, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94852; Mature: 94852

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPP
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHHHHCCCCCCCC
GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC
CEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCC
VPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNS
CHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCCCH
VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDII
HHHHCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQ
CCHHEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
NGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTR
CCEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCHHCCCCCCE
YSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALG
EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHEEECCCCCCCCCCE
ALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS
EEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCHHH
RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGT
HHCCCCEECCCCEEEECCCCCCEEEEEECCCCCEEEEEEHHCCCEEEEEEECCCEEECCC
SNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWR
CCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCCEEEEEEECCCHHHHHCCCCHHHHH
HASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRG
HCCCCCCCCCCCCCCEEHHHHHEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEC
GYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQT
CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVG
CCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEEHHCCCC
IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC
EEEEEEEECCCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCCCEEEEEECCCCCCEE
VANYQLPPERQQQLLTQLSAECR
EEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPP
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCHHHHHHHHHHCCCCCCCC
GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC
CEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCC
VPLTSMIHDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNS
CHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCCCH
VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDII
HHHHCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
PLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQ
CCHHEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
NGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTR
CCEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCHHCCCCCCE
YSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALG
EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHEEECCCCCCCCCCE
ALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS
EEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCHHH
RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGT
HHCCCCEECCCCEEEECCCCCCEEEEEECCCCCEEEEEEHHCCCEEEEEEECCCEEECCC
SNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWR
CCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCCEEEEEEECCCHHHHHCCCCHHHHH
HASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRG
HCCCCCCCCCCCCCCEEHHHHHEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEC
GYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQT
CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVG
CCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEEEEEHHCCCC
IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC
EEEEEEEECCCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCCCEEEEEECCCCCCEE
VANYQLPPERQQQLLTQLSAECR
EEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]