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The map label for this gene is yrdD

Identifier: 157162757

GI number: 157162757

Start: 3475763

End: 3476305

Strand: Reverse

Name: yrdD

Synonym: EcHS_A3477

Alternate gene names: 157162757

Gene position: 3476305-3475763 (Counterclockwise)

Preceding gene: 157162758

Following gene: 157162756

Centisome position: 74.86

GC content: 49.72

Gene sequence:

>543_bases
ATGGCGAAATCAGCACTGTTCACGGTGCGTAATAATGAGTCCTGCCCAAAGTGCGGGGCTGAACTGGTTATTCGATCCGG
GAAACACGGTCCGTTTCTTGGATGCTCACAGTATCCGGCGTGTGACTACGTCCGTCCTCTGAAATCTTCAGCGGATGGAC
ATATCGTCAAAGTTCTGGAGGGGCAGGTTTGCCCTGCATGTGGCGCAAATCTGGTATTACGCCAGGGACGCTTTGGTATG
TTTATTGGTTGCATTAACTACCCTGAATGCGAACATACCGAACTTATCGATAAACCGGACGAAACAGCAATTACATGCCC
CCAATGTCGGACGGGCCATCTGGTCCAGCGCCGCTCCCGTTATGGCAAAACATTTCACTCTTGTGATCGCTACCCGGAGT
GTCAATTTGCCATTAACTTCAAACCCATAGCTGGAGAATGCCCTGAGTGTCATTATCCGCTACTCATCGAAAAGAAAACC
GCGCAGGGTGTAAAACACTTTTGTGCCAGTAAACAATGTGGAAAGCCGGTTTCGGCGGAATAA

Upstream 100 bases:

>100_bases
CCGGGCTGCGAAAATGCGTACCAGCAAATGGAAGAATTACTCTTTGAAGTGAATGAAGGTATGTTGCATTAATCATTTCT
TTAATTCAGCATAAGTTGTT

Downstream 100 bases:

>100_bases
TAACGTGAATAATAACCTGCAAAGAGACGCTATCGCAGCTGCGATAGATGTTCTCAATGAAGAACGTGTCATCGCCTATC
CAACGGAAGCCGTTTTCGGT

Product: topoisomerase DNA-binding C4 zinc finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM
FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
AQGVKHFCASKQCGKPVSAE

Sequences:

>Translated_180_residues
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM
FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
AQGVKHFCASKQCGKPVSAE
>Mature_179_residues
AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMF
IGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA
QGVKHFCASKQCGKPVSAE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1

Homologues:

Organism=Escherichia coli, GI48994931, Length=180, Percent_Identity=100, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDD_ECOLI (P45771)

Other databases:

- EMBL:   U18997
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F65120
- RefSeq:   AP_004507.1
- RefSeq:   YP_026210.1
- ProteinModelPortal:   P45771
- DIP:   DIP-12917N
- MINT:   MINT-1244363
- STRING:   P45771
- EnsemblBacteria:   EBESCT00000000477
- EnsemblBacteria:   EBESCT00000015818
- GeneID:   947782
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5949
- KEGG:   eco:b3283
- EchoBASE:   EB2690
- EcoGene:   EG12841
- eggNOG:   COG0551
- GeneTree:   EBGT00050000011493
- HOGENOM:   HBG296904
- OMA:   GKTFYAC
- ProtClustDB:   CLSK880636
- BioCyc:   EcoCyc:G7699-MONOMER
- Genevestigator:   P45771
- GO:   GO:0005694
- InterPro:   IPR013498

Pfam domain/function: PF01396 zf-C4_Topoisom

EC number: NA

Molecular weight: Translated: 19871; Mature: 19740

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE
CCCCEEEEEECCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC
GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR
CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHH
YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
HCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE
CCCEEEEEECCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC
GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR
CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHH
YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
HCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503