Click here to switch to the map view.

The map label for this gene is yhcB

Identifier: 157162711

GI number: 157162711

Start: 3423779

End: 3424177

Strand: Direct

Name: yhcB

Synonym: EcHS_A3422

Alternate gene names: 157162711

Gene position: 3423779-3424177 (Clockwise)

Preceding gene: 157162699

Following gene: 157162712

Centisome position: 73.73

GC content: 54.39

Gene sequence:

>399_bases
ATGACCTGGGAATATGCGCTAATTGGGTTAGTCGTCGGCATCATTATTGGTGCTGTGGCCATGCGTTTTGGTAATCGTAA
ACTACGCCAGCAACAGGCGTTGCAGTACGAACTGGAAAAGAATAAAGCTGAACTGGACGAGTATCGCGAAGAGCTGGTTA
GCCACTTTGCCCGCAGCGCGGAATTACTGGATACCATGGCGCACGACTATCGCCAGCTGTATCAGCACATGGCAAAAAGC
TCCAGCAGCCTGCTGCCGGAACTGTCTGCTGAAGCAAACCCGTTCCGTAATCGTCTGGCAGAGTCTGAAGCCAGCAACGA
TCAGGCACCGGTGCAGATGCCTCGCGACTATTCTGAAGGCGCATCCGGCCTGCTGCGTACTGGCGCGAAGCGCGACTAA

Upstream 100 bases:

>100_bases
TCCACTTCTGTGGAATTAACGGTTATAGTGGCATAATCAGCCGCAGGCATGGAGCCTGAAGCCAACACCCTACGGAAACA
AAAGACAACGGGAGATGTTC

Downstream 100 bases:

>100_bases
TTTATTTTTCGGGCGCAGCCATTGCGCCCTCCTCTTCTCTCCCTCCCCGACTATCATTTAATCTGGTGTCTCATTGTTAG
CCGTCTGAAAATTCAATAAC

Product: cytochrome d ubiquinol oxidase subunit III

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit III

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKS
SSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEGASGLLRTGAKRD

Sequences:

>Translated_132_residues
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKS
SSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEGASGLLRTGAKRD
>Mature_131_residues
TWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSS
SSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEGASGLLRTGAKRD

Specific function: Unknown

COG id: COG3105

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1628

Homologues:

Organism=Escherichia coli, GI87082232, Length=132, Percent_Identity=100, Blast_Score=271, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHCB_ECO57 (P0ADW5)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B91142
- PIR:   E85987
- RefSeq:   NP_289801.1
- RefSeq:   NP_312133.1
- ProteinModelPortal:   P0ADW5
- EnsemblBacteria:   EBESCT00000024429
- EnsemblBacteria:   EBESCT00000058744
- GeneID:   916045
- GeneID:   958667
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4592
- KEGG:   ecs:ECs4106
- GeneTree:   EBGT00050000010067
- HOGENOM:   HBG391158
- OMA:   QPRDYSE
- ProtClustDB:   PRK11677
- BioCyc:   ECOL83334:ECS4106-MONOMER
- InterPro:   IPR009386

Pfam domain/function: PF06295 DUF1043

EC number: NA

Molecular weight: Translated: 14961; Mature: 14830

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x176f4e18)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
ASGLLRTGAKRD
HHHHHHCCCCCH
>Mature Secondary Structure 
TWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSA
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSEG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
ASGLLRTGAKRD
HHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796