Click here to switch to the map view.

The map label for this gene is tdcR

Identifier: 157162601

GI number: 157162601

Start: 3316218

End: 3316436

Strand: Direct

Name: tdcR

Synonym: EcHS_A3307

Alternate gene names: 157162601

Gene position: 3316218-3316436 (Clockwise)

Preceding gene: 157162591

Following gene: 157162603

Centisome position: 71.42

GC content: 28.77

Gene sequence:

>219_bases
ATGAGCAAGTTCTCAAATTTTATTATAAATAAACCATTTTCAGTGATAAATAATGCGGCATGTCACATTTTTTCACGCTA
TTTGTTGGAGAACAAACATTTATTTTATCAATATTTTAAAATTTCGAATACATGTATTGATCATCTCGAACAATTGATTA
ACGTCAACTTTTTCTCTTCTGACAGGACGTCATTTTGTGAATGCAATCGTTTTCCATAA

Upstream 100 bases:

>100_bases
CGATAACATCATTCGTTATGTGGTTAATACAAAAAAGGGGCTGAGACCATATTTCAAGCAATTACCGGATAATTACCAGG
CAAAATTTGAGTTAAATTTA

Downstream 100 bases:

>100_bases
ATTCTTCTCCCCTCATAGGCGACGAATAGCATTTTGTGTTGAGGATCACAAAACGAATAATTGCTGATCGCCGCGATAAG
GTCAGACAAAGACAACAAGG

Product: DNA-binding transcriptional activator TdcR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP

Sequences:

>Translated_72_residues
MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP
>Mature_71_residues
SKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP

Specific function: Probable trans-acting positive activator for the tdc operon

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082214, Length=72, Percent_Identity=100, Blast_Score=146, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TDCR_ECOLI (P11866)

Other databases:

- EMBL:   X14430
- EMBL:   X16445
- EMBL:   U18997
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D65101
- RefSeq:   AP_003667.1
- RefSeq:   NP_417589.4
- ProteinModelPortal:   P11866
- STRING:   P11866
- EnsemblBacteria:   EBESCT00000001365
- EnsemblBacteria:   EBESCT00000014230
- GeneID:   944907
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5525
- KEGG:   eco:b3119
- EchoBASE:   EB0985
- EcoGene:   EG10992
- GeneTree:   EBGT00050000009967
- HOGENOM:   HBG467975
- OMA:   DNIILYV
- ProtClustDB:   PRK11424
- BioCyc:   EcoCyc:PD03292
- Genevestigator:   P11866
- GO:   GO:0006350

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8608; Mature: 8477

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSS
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DRTSFCECNRFP
CCCCCCCCCCCC
>Mature Secondary Structure 
SKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSS
CCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DRTSFCECNRFP
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2660107; 2573820; 9278503; 7928991