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The map label for this gene is ygeR

Identifier: 157162326

GI number: 157162326

Start: 3026650

End: 3027405

Strand: Reverse

Name: ygeR

Synonym: EcHS_A3025

Alternate gene names: 157162326

Gene position: 3027405-3026650 (Counterclockwise)

Preceding gene: 157162330

Following gene: 157162325

Centisome position: 65.2

GC content: 51.06

Gene sequence:

>756_bases
TTGAGTGCGGGACGCCTGAATAAAAAATCTCTGGGTATCGTGATGTTGTTATCGGTTGGACTGCTTTTGGCGGGCTGTTC
GGGTAGCAAATCATCCGATACAGGAACGTATTCCGGCTCCGTTTACACCGTGAAACGGGGGGATACGCTATATCGTATTT
CGCGCACCACGGGAACCAGCGTAAAAGAACTGGCGCGACTGAACGGCATTTCCCCCCCTTACACCATTGAAGTTGGTCAG
AAACTAAAACTGGGTGGGGCGAAAAGTAGCAGTATTACACGTAAATCAACCGCCAAATCAACGACCAAAACCGCATCGGT
TACACCGTCATCAGCGGTACCGAAATCATCCTGGCCGCCAGTAGGGCAACGTTGTTGGTTATGGCCAACGACAGGGAAAG
TTATCATGCCGTATTCGACAGCAGATGGCGGCAATAAAGGGATTGATATCTCAGCTCCACGGGGTACACCTATTTACGCC
GCGGGTGCAGGAAAGGTGGTGTATGTGGGCAACCAGCTGCGTGGCTACGGTAATCTCATCATGATTAAACACAGTGAAGA
TTACATTACGGCTTACGCCCATAATGACACGATGCTGGTAAATAATGGGCAAAGCGTGAAGGCTGGGCAAAAAATCGCCA
CCATGGGGAGCACGGATGCGGCATCTGTTCGCCTGCATTTCCAGATTCGTTACCGTGCAACGGCAATTGATCCGCTACGT
TACTTGCCGCCTCAGGGCAGCAAGCCAAAATGCTGA

Upstream 100 bases:

>100_bases
CCTCTTTCTCTATTACCACGTTTTTCCAGAAGCAAGAGATTGGGTATCAAGAGGCTGGCTGCTATGATAAGGCGTCTTGT
TTTTTAAGCGAGGAAAGATT

Downstream 100 bases:

>100_bases
TGGCGAATTAATCAGCAGTCAGCAGCGTGGCACTTGCTAAGGAGAGCGTAAGGTTTATAATGCCTTACGCATCTCGAAGC
GGGCGTAGTTCAATGGTAGA

Product: M23B family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQ
KLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC

Sequences:

>Translated_251_residues
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQ
KLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC
>Mature_250_residues
SAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQK
LKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAA
GAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
LPPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=251, Percent_Identity=100, Blast_Score=506, Evalue=1e-145,
Organism=Escherichia coli, GI1789099, Length=263, Percent_Identity=41.8250950570342, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.0708661417323, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=33.9285714285714, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGER_ECOLI (Q46798)

Other databases:

- EMBL:   U28375
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A65070
- RefSeq:   AP_003425.1
- RefSeq:   NP_417341.4
- ProteinModelPortal:   Q46798
- DIP:   DIP-36034N
- STRING:   Q46798
- EnsemblBacteria:   EBESCT00000004435
- EnsemblBacteria:   EBESCT00000017083
- GeneID:   947352
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2833
- KEGG:   eco:b2865
- EchoBASE:   EB2860
- EcoGene:   EG13048
- eggNOG:   COG0739
- GeneTree:   EBGT00050000009952
- HOGENOM:   HBG754735
- OMA:   GRIIAKF
- ProtClustDB:   CLSK894399
- BioCyc:   EcoCyc:G7484-MONOMER
- Genevestigator:   Q46798
- GO:   GO:0001896
- GO:   GO:0006508
- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482
- PANTHER:   PTHR21666:SF7
- SMART:   SM00257

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23; SSF51261 Dup_hybrid_motif

EC number: NA

Molecular weight: Translated: 26565; Mature: 26434

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
CCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCCC
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
CCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEE
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
EEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHH
YLPPQGSKPKC
HCCCCCCCCCC
>Mature Secondary Structure 
SAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTS
CCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCCC
VGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLI
CCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEE
MIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
EEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHH
YLPPQGSKPKC
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503