Definition | Escherichia coli HS, complete genome. |
---|---|
Accession | NC_009800 |
Length | 4,643,538 |
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The map label for this gene is yfcR [H]
Identifier: 157161824
GI number: 157161824
Start: 2492680
End: 2493189
Strand: Reverse
Name: yfcR [H]
Synonym: EcHS_A2487
Alternate gene names: 157161824
Gene position: 2493189-2492680 (Counterclockwise)
Preceding gene: 157161825
Following gene: 157161823
Centisome position: 53.69
GC content: 54.71
Gene sequence:
>510_bases ATGAGTCACAAGTTTTTAGCGGGCGCGGGGCTACTGGTACTGGCCGGATGGGGTGTCAGCGGTTTAGCCGTTGCTGGCAG CGATATCAAACAGGTGGATCTGACGCTGCGAATCCTGGTCGATGGCCCGCCGCCGTGCTCCGTGAAGGGAAGCGCGGTGG AATTTGGCAATGTGGTGATCAACAGGATCGATGGTACCAATTACCAACAGGATGCGAAATACACCCTCAACTGCGGTAAT AAAGTCAGCGATGACTTACGGATGCAGCTCAAAGGCAATACCGCCGTGATCAACGGAGAAACGGTTCTCAGCACGGATAT CGCCGGCCTGGGGGTGCGGATAGAAAACGCCGCCGACAACTCCCTGTTTGCAGTTGGTGAAAATAACTGGACGCCTTTTA ATGTCAACACACAGCCTCAGCTGAAAGCGGTGCCGGTAAAACAGAGCGGGGTGCAACTGACGCCGTCGGAGTTTAACGCC ACGATGACCATGGTGGTGGATTACCAATGA
Upstream 100 bases:
>100_bases CGACTACGGCGCGCGGATGCCGCTGTACTTCAAATGCACCGGCAACAACTGCCAGGTGGATGAAGAGCAGAGCCGCAAAG GCTGATGCCGGGAGGGACTT
Downstream 100 bases:
>100_bases AAAAATTCCTGCTCCTTTTACTGTGCGCTGGTTGCGGGGCTGTGCTGGCGGCGGAAGATGACATCACATTCCACGGTACG CTGATGTCGCCGCCCGCCTG
Product: putative minor fimbrial subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MSHKFLAGAGLLVLAGWGVSGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVEFGNVVINRIDGTNYQQDAKYTLNCGN KVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA TMTMVVDYQ
Sequences:
>Translated_169_residues MSHKFLAGAGLLVLAGWGVSGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVEFGNVVINRIDGTNYQQDAKYTLNCGN KVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA TMTMVVDYQ >Mature_168_residues SHKFLAGAGLLVLAGWGVSGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVEFGNVVINRIDGTNYQQDAKYTLNCGNK VSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNAT MTMVVDYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788676, Length=169, Percent_Identity=71.5976331360947, Blast_Score=251, Evalue=2e-68, Organism=Escherichia coli, GI1788675, Length=147, Percent_Identity=30.6122448979592, Blast_Score=66, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008966 - InterPro: IPR000259 - InterPro: IPR014779 [H]
Pfam domain/function: PF00419 Fimbrial [H]
EC number: NA
Molecular weight: Translated: 17895; Mature: 17763
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHKFLAGAGLLVLAGWGVSGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVEFGNVVI CCCCEECCCCEEEEECCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEECCEEE NRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADN EEECCCCCCCCCEEEEECCCCCCCCEEEEECCCEEEEECCEEEEECCCEEEEEEECCCCC SLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNATMTMVVDYQ CEEEEECCCCCEEECCCCCCEEEECCCCCCCEECHHCCCEEEEEEEEEC >Mature Secondary Structure SHKFLAGAGLLVLAGWGVSGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVEFGNVVI CCCEECCCCEEEEECCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEECCEEE NRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADN EEECCCCCCCCCEEEEECCCCCCCCEEEEECCCEEEEECCEEEEECCCEEEEEEECCCCC SLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNATMTMVVDYQ CEEEEECCCCCEEECCCCCCEEEECCCCCCCEECHHCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]