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The map label for this gene is yodB

Identifier: 157161442

GI number: 157161442

Start: 2061468

End: 2061998

Strand: Direct

Name: yodB

Synonym: EcHS_A2075

Alternate gene names: 157161442

Gene position: 2061468-2061998 (Clockwise)

Preceding gene: 157161441

Following gene: 157161445

Centisome position: 44.39

GC content: 42.0

Gene sequence:

>531_bases
ATGAACCGATTCTCAAAAACTCAAATTTATTTACATTGGATAACGCTGCTTTTCGTTGCAATAACCTATGCCGCGATGGA
ACTCCGTGGCTGGTTTCCTAAAGGTAGTAGTACTTATCTGCTGATGCGAGAAACACATTACAATGCGGGTATATTCGTTT
GGGTGTTAATGTTTTCACGCCTGATTATAAAACACCGTTATAGTGATCCTTCTATTGTGCCACCGCCACCTGCCTGGCAA
ATGAAAGCGGCTTCGCTAATGCACATCATGCTTTATATAACCTTCCTTGCACTTCCTCTGCTGGGGATTGCTTTGATGGC
TTACAGTGGAAAATCGTGGAGTTTCCTTGGTTTCAATGTGTCTCCCTTTGTTACCCCAAACAGCGAAATTAAAGCACTGA
TAAAAAATATTCACGAAACCTGGGCAAATATAGGTTACTTTTTAATCGCAGCTCACGCTGGCGCAGCACTCTTTCATCAC
TACATTCAGAAAGATAATACTCTGTTACGAATGATGCCTCGCCGCAAATAA

Upstream 100 bases:

>100_bases
ATCAATTTTTTAAATAACAAATTCTTAAAACCACATCTGTATAAGGAATTTTTAAGGTTCGTGGGATAGCTTGACTGTAA
AAATTACAGGAGCTACAAAA

Downstream 100 bases:

>100_bases
GTCGATCCCCTGACAAGGAAATGTGAACCATGGACATCAACGCGTCATAAATGTTTACGCAAGTGCACAATGCACCCTTT
CCACTATCAACAAGGAGGAG

Product: nickel-dependent hydrogenase, b-type cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHH
YIQKDNTLLRMMPRRK

Sequences:

>Translated_176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHH
YIQKDNTLLRMMPRRK
>Mature_176_residues
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQ
MKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHH
YIQKDNTLLRMMPRRK

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=100, Blast_Score=360, Evalue=1e-101,
Organism=Escherichia coli, GI87081903, Length=175, Percent_Identity=42.2857142857143, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): C56H_ECOLI (P76345)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   B64962
- RefSeq:   AP_002582.1
- RefSeq:   NP_416483.4
- ProteinModelPortal:   P76345
- STRING:   P76345
- EnsemblBacteria:   EBESCT00000004845
- EnsemblBacteria:   EBESCT00000015528
- GeneID:   946491
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5323
- KEGG:   eco:b1974
- EchoBASE:   EB3803
- EcoGene:   EG14050
- eggNOG:   COG3038
- GeneTree:   EBGT00050000009431
- HOGENOM:   HBG741588
- OMA:   HLALYVF
- ProtClustDB:   CLSK880256
- BioCyc:   EcoCyc:G7062-MONOMER
- Genevestigator:   P76345
- GO:   GO:0006810
- InterPro:   IPR005797
- InterPro:   IPR016174

Pfam domain/function: PF00033 Cytochrom_B_N; SSF81342 Transmembr_di-haem_cytochrome

EC number: NA

Molecular weight: Translated: 20337; Mature: 20337

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15065910)-; HASH(0x14d81a64)-; HASH(0x120e5008)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
SPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCH
>Mature Secondary Structure
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
LIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNV
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
SPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503