BacMap

Definition	Escherichia coli HS, complete genome.
Accession	NC_009800
Length	4,643,538

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The map label for this gene is ynjD

Identifier: 157161218

GI number: 157161218

Start: 1856829

End: 1857482

Strand: Direct

Name: ynjD

Synonym: EcHS_A1840

Alternate gene names: 157161218

Gene position: 1856829-1857482 (Clockwise)

Preceding gene: 157161217

Following gene: 157161219

Centisome position: 39.99

GC content: 50.92

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGG
TGACATTGTCACGTTAATGGGGCCGTCTGGTTGTGGAAAATCCACTCTGTTTTCATGGATGATTGGTGCACTGGCCGAAC
AGTTTTCTTGTACAGGTGAGCTATGGCTCAATGAGCAACGGATTGACATCCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTTCAGGATGCACTGTTATTTGACCAGTTCAGTGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAAGG
GAATGCCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGAGGGAGCTTTCCATCAGGATCCTGCCACTT
TGTCTGGCGGTCAGCGAGCGCGCGTTGCTCTACTACGCGCCCTTCTCGCCCAACCAAAAGCGTTACTCCTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGCCCTGGCGATCCCCGT
CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCAGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

Organism=Homo sapiens, GI42490749, Length=169, Percent_Identity=33.1360946745562, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI42741659, Length=173, Percent_Identity=32.3699421965318, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27262624, Length=189, Percent_Identity=31.2169312169312, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27262626, Length=189, Percent_Identity=31.2169312169312, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592956, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI46592978, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI46592971, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI46592964, Length=154, Percent_Identity=31.1688311688312, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI46592915, Length=154, Percent_Identity=31.1688311688312, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI46592898, Length=154, Percent_Identity=31.1688311688312, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI27881501, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI116734710, Length=155, Percent_Identity=30.3225806451613, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4505771, Length=169, Percent_Identity=32.5443786982249, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI215820660, Length=142, Percent_Identity=30.9859154929577, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI20143975, Length=142, Percent_Identity=30.9859154929577, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=100, Blast_Score=439, Evalue=1e-125,
Organism=Escherichia coli, GI1790467, Length=191, Percent_Identity=36.1256544502618, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=35.7142857142857, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=37.2881355932203, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=35.5329949238579, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=34, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=33.1521739130435, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=35.9116022099448, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=34.3915343915344, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=33.1521739130435, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=31.25, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789593, Length=201, Percent_Identity=31.3432835820896, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=33.502538071066, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=34.2391304347826, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=33.8308457711443, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=35.672514619883, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=31.8407960199005, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786872, Length=199, Percent_Identity=36.6834170854271, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=31.4285714285714, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=30.3964757709251, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790544, Length=183, Percent_Identity=32.7868852459016, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789962, Length=192, Percent_Identity=31.7708333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=35.1351351351351, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.5024154589372, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.951690821256, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=31.4814814814815, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=33.160621761658, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.8457711442786, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=198, Percent_Identity=34.8484848484849, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=28.310502283105, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.5164319248826, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786319, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787792, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=176, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=30.1980198019802, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=192, Percent_Identity=30.7291666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787500, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=29.6116504854369, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48995001, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.8457711442786, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=28.2608695652174, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=172, Percent_Identity=30.2325581395349, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786981, Length=186, Percent_Identity=30.6451612903226, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=183, Percent_Identity=27.3224043715847, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=37.3493975903614, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=36.969696969697, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=36.969696969697, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=36.969696969697, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=34.1614906832298, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=32.2222222222222, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=32.3699421965318, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=166, Percent_Identity=33.1325301204819, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=176, Percent_Identity=33.5227272727273, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=174, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=173, Percent_Identity=33.5260115606936, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659289, Length=179, Percent_Identity=32.4022346368715, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281363262, Length=164, Percent_Identity=32.9268292682927, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653245, Length=164, Percent_Identity=32.9268292682927, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357907, Length=207, Percent_Identity=31.4009661835749, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI85725262, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=30.4878048780488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=33.1550802139037, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=33.1550802139037, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574533, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNJD_ECOLI (P76909)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D64935
- RefSeq:   AP_002375.1
- RefSeq:   NP_416270.1
- ProteinModelPortal:   P76909
- SMR:   P76909
- STRING:   P76909
- EnsemblBacteria:   EBESCT00000004858
- EnsemblBacteria:   EBESCT00000017931
- GeneID:   944965
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5286
- KEGG:   eco:b1756
- EchoBASE:   EB3762
- EcoGene:   EG14006
- eggNOG:   COG4136
- GeneTree:   EBGT00050000008236
- HOGENOM:   HBG758042
- OMA:   LRDNFRH
- ProtClustDB:   CLSK880183
- BioCyc:   EcoCyc:YNJD-MONOMER
- Genevestigator:   P76909
- GO:   GO:0006810
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- SMART:   SM00382

Pfam domain/function: PF00005 ABC_tran

EC number: NA

Molecular weight: Translated: 24017; Mature: 24017

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGE
CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHH
LWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGE
CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHH
LWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
RALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503