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The map label for this gene is yidP [H]

Identifier: 157161007

GI number: 157161007

Start: 1642563

End: 1643282

Strand: Direct

Name: yidP [H]

Synonym: EcHS_A1621

Alternate gene names: 157161007

Gene position: 1642563-1643282 (Clockwise)

Preceding gene: 157161002

Following gene: 157161009

Centisome position: 35.37

GC content: 41.81

Gene sequence:

>720_bases
GTGATTTTTCAAAAGATTGCCCGCTTACTTAAATCTGAGATCAATGGCTATTCATGGCACGTTGGTGATTTGTTGCCGTC
AGAAGCTGAACTCGCAGTTCGTTATAATGTTTCGCGTAATACCCTGCGTAAGGCATTATCCTTGCTGGAAGGCGAAGGAA
TTATTCACAGAAAGCATGGTTCAGGAACATACATTCAAAAAAAGAATTTTGTTGCACACATTGATCACATGAACAGCTTC
AGTGAAATTGCGCATAAAAGCGGCAAAGAGGCAGGGAGTCAGATTATGAAATTTGAAGTGCAGGATGCTTCACCCACTAT
TGCAACTGAGCTGAATTTAGTGCCCGGTGAGCAGGTTTATTACATAAAGAGACTGCGATTCATTGAGGATAATGCGGCAC
AATTAGAAGAAACGTGGATGTCAGTGGCACGTTTTCCTGATTTAACCGTATCACATATGCAAAAATCCAAATTTTCGTAT
ATTGAGAACGAATGCGGGATCAAAATCATTGGCACCTATGAAACTTTCTCCCCTACTTTTCCTACCCCAGAAATCGCCAG
TATTTTACGGATCAGCCCACGGGATCCCATACTTAAAATTCAGACCCAGGCTGTGGACAGTAACTCTATTCCGCTGGATT
ATTCGTTACTTTACAGCAATATTATCGAGTTCCAGGTAAAGTACTTTTTCCGCGATAAAAGCAGACGCACAGAGTGCTGA

Upstream 100 bases:

>100_bases
AAGTTGTTCAACATCAGGGTAATAATTAAACGACTCGGCCATACGATAAACCAATCAGGACTCAACTCCTTGTTTTCAAT
GGCTCTTAAAAGGTGCAAAA

Downstream 100 bases:

>100_bases
CATCACATTCTGTGCGTATGGTTTAGCCTCTAACCTTTACCGCTTTACGCCACCGCAAGCCAAATACATTGATATACAGC
CCGGTCATAATGAGCACCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPTIATELNLVPGEQVYYIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSY
IENECGIKIIGTYETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIIEFQVKYFFRDKSRRTEC

Sequences:

>Translated_239_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPTIATELNLVPGEQVYYIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSY
IENECGIKIIGTYETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIIEFQVKYFFRDKSRRTEC
>Mature_239_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPTIATELNLVPGEQVYYIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSY
IENECGIKIIGTYETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIIEFQVKYFFRDKSRRTEC

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=36.3636363636364, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1786950, Length=198, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=23.7668161434978, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788418, Length=215, Percent_Identity=27.4418604651163, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790540, Length=234, Percent_Identity=26.9230769230769, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27370; Mature: 27370

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHG
CCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
SGTYIQKKNFVAHIDHMNSFSEIAHKSGKEAGSQIMKFEVQDASPTIATELNLVPGEQVY
CCCEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCEEEEEECCCCCHHH
YIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSYIENECGIKIIGTYETFSPTF
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIIEFQVKYFFRDKSRRTEC
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHG
CCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
SGTYIQKKNFVAHIDHMNSFSEIAHKSGKEAGSQIMKFEVQDASPTIATELNLVPGEQVY
CCCEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCEEEEEECCCCCHHH
YIKRLRFIEDNAAQLEETWMSVARFPDLTVSHMQKSKFSYIENECGIKIIGTYETFSPTF
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIIEFQVKYFFRDKSRRTEC
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]