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The map label for this gene is ydeQ

Identifier: 157160977

GI number: 157160977

Start: 1603643

End: 1604557

Strand: Reverse

Name: ydeQ

Synonym: EcHS_A1586

Alternate gene names: 157160977

Gene position: 1604557-1603643 (Counterclockwise)

Preceding gene: 157160978

Following gene: 157160976

Centisome position: 34.55

GC content: 44.7

Gene sequence:

>915_bases
ATGGGTAAAACAATCAGTATAAAGGTCCTGTTCGGTATTTATCTTCTATTAATGGCAGGCAAAGTTTTTGCCTTCAGTTG
TAATGTCGATGGCGGGTCAAGTATTGGAGCAGGTACAACCTCTGTTTATGTTAATCTCGACCCTGTAATACAGCCGGGCC
AGAATCTGGTTGTAGACTTGTCTCAGCATATAAGTTGCTGGAATGATTACGGCGGCTGGTACGACACTGATCATATAAAC
CTGGTACAAGGCTCAGCTTTCGCAGGCTCCCTACAGTCATATAAAGGATCGCTGTACTGGAATAATGTGACCTACCCCTT
CCCGTTGACGACAAATACCAACGTATTGGATATTGGTGATAAGACACCGATGCCATTACCGTTAAAACTCTATATTACCC
CAGTTGGGGCGGCCGGTGGAGTTGTCATAAAAGCGGGGGAAGTCATTGCCCGTATTCATATGTATAAAATTGCAACATTA
GGAAGCGGAAATCCGCGTAATTTTACGTGGAATATTATTTCAAATAACAATGTTGTTATGCCAACAGGCGGCTGCACCGT
TGATAGTCGTAATGTCACCGTGGATCTCCCGGACTTTCCTGGAAGCGCAGAAATACCCCTTGGCGTATATTGCTCAAGCG
AACAAAAGCTCTCATTTTATCTTTCGGGTGCCACCACTGACAGTAGCCGACAAGTGTTTGCTAACACAGCACCTGATGCA
ACAAAAGCATCGGGAGTGGGTGTCACTCTAATGCGTAATGGAAAAATACTGGCTACGGGAGAAAATGTCTCCCTGGGGAC
AGTAAATAAAAGCAAAGTACCTCTGGGTTTAAGCGCAACCTATGGACAAACAGGAAACAAGGTTTCAGCCGGAACCGTCC
AGTCAGTCATTGGTGTCACTTTTATCTATGAATAA

Upstream 100 bases:

>100_bases
ACGATCGAGGCGCTAATCAATGTGATCTACACCTGGCAATAACGTCGATTCGATTTTCTTAGCCTTCTTTTTAAATCAAT
TTTTAACCTTAGGATATATC

Downstream 100 bases:

>100_bases
TTGTGATTTTGACCTTAGTCTATGCGCTCCATTCACGAAAATTGCGCGGATAATTATTTTGTGAAGGCTATTAGCCTACA
CCTGTAAGAAAATCCGCGCA

Product: protein FimH-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDLSQHISCWNDYGGWYDTDHIN
LVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATL
GSGNPRNFTWNIISNNNVVMPTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA
TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVTFIYE

Sequences:

>Translated_304_residues
MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDLSQHISCWNDYGGWYDTDHIN
LVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATL
GSGNPRNFTWNIISNNNVVMPTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA
TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVTFIYE
>Mature_303_residues
GKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDLSQHISCWNDYGGWYDTDHINL
VQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLG
SGNPRNFTWNIISNNNVVMPTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDAT
KASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVTFIYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

Organism=Escherichia coli, GI1787779, Length=304, Percent_Identity=100, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1790775, Length=297, Percent_Identity=47.8114478114478, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEQ_ECOLI (P77588)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64904
- RefSeq:   AP_002124.1
- RefSeq:   NP_416019.1
- ProteinModelPortal:   P77588
- SMR:   P77588
- STRING:   P77588
- EnsemblBacteria:   EBESCT00000004379
- EnsemblBacteria:   EBESCT00000014724
- GeneID:   946050
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1496
- KEGG:   eco:b1502
- EchoBASE:   EB3560
- EcoGene:   EG13799
- eggNOG:   NOG68182
- GeneTree:   EBGT00050000008572
- HOGENOM:   HBG416825
- OMA:   MSQHISC
- ProtClustDB:   CLSK2393193
- BioCyc:   EcoCyc:G6792-MONOMER
- Genevestigator:   P77588
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- InterPro:   IPR015243
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; PF09160 FimH_man-bind; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 32070; Mature: 31939

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDL
CCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEE
SQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGD
HHHHHHHHCCCCEECCCEEEEEECCCCCCCHHHCCCEEEECCEEEEEECCCCCCEEECCC
KTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLGSGNPRNFTWNIISNNNVVM
CCCCCEEEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCEEE
PTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA
ECCCCEECCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCC
TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVT
CCCCCCEEEEEECCEEEEECCCEEEEECCCCCCCEEEEECCCCCCCEEECCHHHHEEEEE
FIYE
EEEC
>Mature Secondary Structure 
GKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYVNLDPVIQPGQNLVVDL
CCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEE
SQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNNVTYPFPLTTNTNVLDIGD
HHHHHHHHCCCCEECCCEEEEEECCCCCCCHHHCCCEEEECCEEEEEECCCCCCEEECCC
KTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLGSGNPRNFTWNIISNNNVVM
CCCCCEEEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCEEE
PTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSFYLSGATTDSSRQVFANTAPDA
ECCCCEECCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCC
TKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGLSATYGQTGNKVSAGTVQSVIGVT
CCCCCCEEEEEECCEEEEECCCEEEEECCCCCCCEEEEECCCCCCCEEECCHHHHEEEEE
FIYE
EEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503