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The map label for this gene is ynbD [H]

Identifier: 157160889

GI number: 157160889

Start: 1501337

End: 1502629

Strand: Direct

Name: ynbD [H]

Synonym: EcHS_A1494

Alternate gene names: 157160889

Gene position: 1501337-1502629 (Clockwise)

Preceding gene: 157160888

Following gene: 157160891

Centisome position: 32.33

GC content: 50.35

Gene sequence:

>1293_bases
TTGCTACAAGGCGCTGGCTGGTTATTGTTGCTGGCCCCGTTTTTCTTCTTCACCTATGGATCTCTTAATCAGTTCACCGC
GGTTCAGGACCTTAACAGCCATGATATTCCCAGTCAGGTATTCGGTTGGGAAACGGCGATCCCTTTTCTTCCCTGGACTA
TTGTTCCTTACTGGAGTCTGGATCTTTTATATGGATTTTCGCTGTTCGTTTGTAGCACGACATTCGAACAGCGCCGACTT
GTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGGTTTTTTTCTCTACCCGCTGAAGTTTAGTTTTATCCGTCC
TGAAGTGAGTGGGGTGACAGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGC
ATATTATTCTCTGCTGGCTACTTTGGCGTCACTTTCGTCAGCATCTGGCTGTGAGGTGGCGTAAAGTCTGCGGCGGATGG
TTTTTACTCATCGCCATTTCGACGCTGACGACCTGGCAGCATCATTTTATTGATGTCATCACGGGGCTGGCGGTAGGTAT
GTTAATTGACTGGATGGTGCCCGTCGACCGTCGTTGGAATTATCAGAAACCTGATCAACGTCGAATCAAAATAGCACTGC
CATATGTCGTAGGCGCGGGCTCGTGCATTGTGTTGATGGAGCTAATGATAATGCTTCAGTTATGGTGGTCAGTCTGGTTA
TGTTGGCCAGTATTATCGCTATTCATCATTGGCCGTGGGTACGGTGGGCTTGGCGCGATAACAACAGGGAAAGATAGTCA
GGGGAAACTCCCGCCCGCCGTTTACTGGCTGACATTGCCCTGGCGTATCGGGATGTGGCTGTCTATGCGTTGGTCTTGTC
TTCGCCTGGAGCCGGTGAGCAAAATTACTGCTGGTGTTTATTTAGGGGCGTTTCCACGACATATTCCGGCACAGAATGCG
GTTCTGGACGTCACCTTTGAATTCCCTCGCGGACGAGCCACAAAAGATCGACTCTATTTTTGTGTACCGATGCTGGATCT
GGTGGTTCCGGAAGAGGGGGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGG
TCCATTGTGCATTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTT
AATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCAGATTGTGCTGACAGACGAGCACAAAGCGATGCTGAGATTATG
GGAAAACAGGTAA

Upstream 100 bases:

>100_bases
CGTGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGTATTTTTACGGTTTCGATGGCGGTGCGTCGTGA
TAACTGAACGTCGGAACGTA

Downstream 100 bases:

>100_bases
GTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGC
TGCTTTTGCGTCAGACTGTG

Product: PAP2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMIMLQLWWSVWL
CWPVLSLFIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWSCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
NEAISYIRARRPQIVLTDEHKAMLRLWENR

Sequences:

>Translated_430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMIMLQLWWSVWL
CWPVLSLFIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWSCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
NEAISYIRARRPQIVLTDEHKAMLRLWENR
>Mature_430_residues
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRL
VHRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAVRWRKVCGGW
FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMIMLQLWWSVWL
CWPVLSLFIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPWRIGMWLSMRWSCLRLEPVSKITAGVYLGAFPRHIPAQNA
VLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTV
NEAISYIRARRPQIVLTDEHKAMLRLWENR

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=430, Percent_Identity=97.9069767441861, Blast_Score=835, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49545; Mature: 49545

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCC
>Mature Secondary Structure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HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]