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The map label for this gene is ycjD [H]

Identifier: 157160799

GI number: 157160799

Start: 1398768

End: 1399214

Strand: Reverse

Name: ycjD [H]

Synonym: EcHS_A1403

Alternate gene names: 157160799

Gene position: 1399214-1398768 (Counterclockwise)

Preceding gene: 157160800

Following gene: 157160797

Centisome position: 30.13

GC content: 50.56

Gene sequence:

>447_bases
GTGATAGATAAAATTAAATCAAATGCGCGTGATTTAAGACGCAATCTCACTTTGCAGGAACGAAAGCTCTGGCGATATCT
TCGCAGCCGACGTTTTAGTGATTTCAAATTTCGCCGTCAACATCCAGTGGGGAGCTACATTCTCGATTTTGCTTGCTGCT
CGGCGCGTGTAGTCGTTGAGCTGGATGGTGGGCAGCATGATTTAGCAGTTGCCTATGATTCCAGGCGCACTAGCTGGCTT
GAGTCGCAGGGCTGGACCGTGCTGCGTTTCTGGAATAACGAGATTGATTGTAATGAGGAGACGGTGCTGGAGAATATTCG
GCAAGGTCTGAACCGTCCCAGCCATCGCCATGAAAGGGTTAGGGGCTGTATGAGCCTGTTTGTTGCTGGGGTAACAATAT
TTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGA

Upstream 100 bases:

>100_bases
TTGACGGCGGATGCGTGGCGTAAAGATCGCTAATTTTCTGAATCCTCCTTCCAGATTATTCACCTCATTCTGACAAAAGA
TTAAATCTTGTCAGAATGAG

Downstream 100 bases:

>100_bases
GGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAA
TAACCGTTTATCTGTTCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEETVLENIRQGLNRPSHRHERVRGCMSLFVAGVTIFAQYGPLAPLGRGLG

Sequences:

>Translated_148_residues
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEETVLENIRQGLNRPSHRHERVRGCMSLFVAGVTIFAQYGPLAPLGRGLG
>Mature_148_residues
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEETVLENIRQGLNRPSHRHERVRGCMSLFVAGVTIFAQYGPLAPLGRGLG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=114, Percent_Identity=97.3684210526316, Blast_Score=227, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 17269; Mature: 17269

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENIRQGLNRPSHRHERV
ECCCCCEEEEEECCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH
RGCMSLFVAGVTIFAQYGPLAPLGRGLG
HHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVE
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENIRQGLNRPSHRHERV
ECCCCCEEEEEECCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH
RGCMSLFVAGVTIFAQYGPLAPLGRGLG
HHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]