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The map label for this gene is yciF

Identifier: 157160763

GI number: 157160763

Start: 1362327

End: 1362827

Strand: Reverse

Name: yciF

Synonym: EcHS_A1367

Alternate gene names: 157160763

Gene position: 1362827-1362327 (Counterclockwise)

Preceding gene: 157160764

Following gene: 157160762

Centisome position: 29.35

GC content: 43.11

Gene sequence:

>501_bases
ATGAATATGAAGACCATTGAAGATGTATTTATTCACCTGCTTTCAGATACCTACAGCGCAGAAAAACAATTAACCCGGGC
ACTGGCAAAACTCGCAAGAGCAACATCAAATGAAAAATTAAGTCAGGCTTTTCATGCGCACCTCGAGGAAACTCATGGAC
AGATTGAACGTATTGATCAAGTTGTGGAGTCCGAATCGAACCTGAAAATTAAGCGCATGAAATGTGTGGCAATGGAAGGT
CTTATTGAAGAAGCTAATGAGGTCATCGAAAGTACCGAGAAAAACGAAGTGCGTGATGCCGCACTGATTGCCGCAGCACA
GAAAGTCGAGCATTATGAGATTGCCAGTTACGGGACATTAGCGACGCTGGCTGAACAATTAGGTTACCGTAAAGCAGCGA
AGCTTCTGAAAGAAACCCTGGAAGAAGAAAAGGCCACCGACATCAAACTGACTGATCTGGCCATTAATAACGTAAATAAG
AAAGCCGAAAATAAAGCCTGA

Upstream 100 bases:

>100_bases
TCAGGCAAATCCTGATTCACCGTTAATTATTAATATCAGCTGATAAAGATAATTGCATCTGCGGGCCGTATGGCTCGCAG
TGATTTCACTGGAGAAAAAT

Downstream 100 bases:

>100_bases
AATATGAATTTTAACTTTTAGTCATTTTATAAAGAGGACATTTTCATGAATCGTATTGAACATTATCATGACTGGTTACG
TGACGCCCACGCAATGGAAA

Product: YciF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEG
LIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNK
KAENKA

Sequences:

>Translated_166_residues
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEG
LIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNK
KAENKA
>Mature_166_residues
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEG
LIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNK
KAENKA

Specific function: Unknown

COG id: COG3685

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787512, Length=166, Percent_Identity=100, Blast_Score=328, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCIF_ECOLI (P21362)

Other databases:

- EMBL:   X13583
- EMBL:   U25417
- EMBL:   U25419
- EMBL:   U25420
- EMBL:   U25421
- EMBL:   U25423
- EMBL:   U25427
- EMBL:   U23489
- EMBL:   U23490
- EMBL:   U23491
- EMBL:   U23492
- EMBL:   U00096
- EMBL:   AP009048
- EMBL:   AF062842
- PIR:   S07795
- RefSeq:   AP_001884.1
- RefSeq:   NP_415774.1
- PDB:   2GS4
- PDBsum:   2GS4
- ProteinModelPortal:   P21362
- SMR:   P21362
- DIP:   DIP-11580N
- STRING:   P21362
- EnsemblBacteria:   EBESCT00000000938
- EnsemblBacteria:   EBESCT00000014688
- GeneID:   947133
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1250
- KEGG:   eco:b1258
- EchoBASE:   EB1116
- EcoGene:   EG11126
- eggNOG:   COG3685
- GeneTree:   EBGT00050000009521
- HOGENOM:   HBG334385
- OMA:   KDVYYAE
- ProtClustDB:   CLSK879985
- BioCyc:   EcoCyc:EG11126-MONOMER
- Genevestigator:   P21362
- InterPro:   IPR010287
- InterPro:   IPR012347
- InterPro:   IPR009078
- Gene3D:   G3DSA:1.20.1260.10

Pfam domain/function: PF05974 DUF892; SSF47240 Ferritin/RR_like

EC number: NA

Molecular weight: Translated: 18597; Mature: 18597

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAENKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAENKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 8455549