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The map label for this gene is ycfM

Identifier: 157160632

GI number: 157160632

Start: 1226318

End: 1226959

Strand: Direct

Name: ycfM

Synonym: EcHS_A1228

Alternate gene names: 157160632

Gene position: 1226318-1226959 (Clockwise)

Preceding gene: 157160631

Following gene: 157160633

Centisome position: 26.41

GC content: 55.92

Gene sequence:

>642_bases
ATGACAAAAATGAGTCGCTACGCCTTGATTACCGCGCTGGCGATGTTTCTCGCCGGGTGTGTGGGGCAACGTGAACCTGC
ACCGGTAGAAGAAGTGAAACCAGCGCCGGAACAACCAGCCGAGCCACAACAGCCTGTCCCCACAGTGCCCTCGGTGCCGA
CGATCCCGCAGCAGCCAGGCCCAATTGAGCACGAAGATCAAACTGCACCGCCTGCGCCGCATATTCGCCATTATGACTGG
AATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAG
CGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGTA
AATTTACCCTGGTTTCCGCCCAGCAGCTGTCGATGGCTAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGTACC
CGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACGTGCTATACTCCAGCGCCTCTGGCAACGTTAACGC
TCCGACCCTACAAATGCAGCTGATGCTGGTGCAGACGGGCGAAATTATCTGGTCAGGTAAAGGTGCCGTTTCGCAGCAAT
AA

Upstream 100 bases:

>100_bases
ACCATTCCCGCACATTCGGCGGTAACGCTGTACGGCAGCGCCAATTTTCTGGGGGCGCACAAAGTCAGACTTTATCTATA
TTTGTAAGGGGTGAATCTTG

Downstream 100 bases:

>100_bases
TCCCATCACGCGCGACGAATTGCTGTCGCGCTTTTTCCCGCAGTTTCATCCCGTCACGACGTTTAATAGTGGGCTTAGTG
GCGGGAGTTTTCTCATTGAA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDW
NGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ

Sequences:

>Translated_213_residues
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDW
NGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
>Mature_212_residues
TKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWN
GAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTR
SKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=213, Percent_Identity=100, Blast_Score=434, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCFM_ECO57 (P0AB39)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C90814
- PIR:   G85673
- RefSeq:   NP_287239.1
- RefSeq:   NP_309510.1
- ProteinModelPortal:   P0AB39
- EnsemblBacteria:   EBESCT00000028299
- EnsemblBacteria:   EBESCT00000055496
- GeneID:   913505
- GeneID:   959457
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1744
- KEGG:   ecs:ECs1483
- GeneTree:   EBGT00050000009949
- HOGENOM:   HBG416328
- OMA:   HEDRTAP
- ProtClustDB:   CLSK879953
- BioCyc:   ECOL83334:ECS1483-MONOMER
- InterPro:   IPR014094
- TIGRFAMs:   TIGR02722

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22516; Mature: 22385

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE
CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEEC
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC
>Mature Secondary Structure 
TKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPG
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAE
CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEEC
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796