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The map label for this gene is ycdZ

Identifier: 157160558

GI number: 157160558

Start: 1163192

End: 1163683

Strand: Direct

Name: ycdZ

Synonym: EcHS_A1154

Alternate gene names: 157160558

Gene position: 1163192-1163683 (Clockwise)

Preceding gene: 157160557

Following gene: 157160564

Centisome position: 25.05

GC content: 53.86

Gene sequence:

>492_bases
ATGAACATACTTCTCTCTATTGCAATCACAACAGGCATTCTCTCCGGTATCTGGGGATGGGTGGCTGTTTCCCTGGGCTT
ACTAAGCTGGGCGGGCTTCCTGGGCTGTACGGCCTACTTTGCCTGCCCGCAAGGTGGGCTGAAAGGGCTGGCGATCTCCG
CTGCAACCCTGCTTAGTGGCGTGGTGTGGGCGATGGTCATTATTTACGGTAGTGCACTGGCACCACATCTGGAAATTCTC
GGTTATGTCATAACCGGTATTGTCGCGTTTCTGATGTGTATTCAGGCCAAACAGCTGCTGCTTTCATTTGTTCCGGGGAC
GTTTATAGGCGCATGCGCGACGTTTGCCGGGCAGGGTGACTGGAAACTGGTGTTACCTTCGCTGGCGCTTGGGCTGATAT
TTGGTTACGCAATGAAAAACAGTGGCCTGTGGCTGGCGGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAA
AATAAAGCGTGA

Upstream 100 bases:

>100_bases
TGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGT
TTTCTGCTATCATGCGCGGC

Downstream 100 bases:

>100_bases
GGGGCACTCACGCTTTCGCTTAAACAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAA
CCGACATATGGCGGTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA

Sequences:

>Translated_163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA
>Mature_163_residues
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEIL
GYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK
NKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC

Homologues:

Organism=Escherichia coli, GI87081825, Length=163, Percent_Identity=100, Blast_Score=318, Evalue=8e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDZ_ECOLI (P75916)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A64846
- RefSeq:   AP_001661.1
- RefSeq:   NP_415554.4
- ProteinModelPortal:   P75916
- STRING:   P75916
- EnsemblBacteria:   EBESCT00000002360
- EnsemblBacteria:   EBESCT00000017211
- GeneID:   945617
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5147
- KEGG:   eco:b1036
- EchoBASE:   EB3631
- EcoGene:   EG13872
- eggNOG:   NOG05567
- GeneTree:   EBGT00050000009766
- HOGENOM:   HBG467277
- OMA:   GSCATFA
- ProtClustDB:   CLSK869642
- BioCyc:   EcoCyc:G6542-MONOMER
- Genevestigator:   P75916
- InterPro:   IPR009476

Pfam domain/function: PF06496 DUF1097

EC number: NA

Molecular weight: Translated: 17075; Mature: 17075

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x13f34bcc)-; HASH(0xc23c348)-; HASH(0x139619d8)-; HASH(0x139b81c0)-; HASH(0x14023c34)-; HASH(0x14007c80)-;

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
WKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCH
>Mature Secondary Structure
MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLAISAATLLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
WKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIKNKA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503