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The map label for this gene is ymbA

Identifier: 157160473

GI number: 157160473

Start: 1076510

End: 1077073

Strand: Direct

Name: ymbA

Synonym: EcHS_A1061

Alternate gene names: 157160473

Gene position: 1076510-1077073 (Clockwise)

Preceding gene: 157160472

Following gene: 157160474

Centisome position: 23.18

GC content: 52.13

Gene sequence:

>564_bases
ATGAAAAAGTGGCTAGTGACGATTGCAGCACTGTGGCTGGCCGGATGCAGCTCCGGCGAAATTAATAAAAACTATTACCA
GTTACCTGTGGTGCAGAGCGGTACACAAAGTACCGCCAGCCAGGGCAATCGTCTGTTATGGGTAGAGCAGGTCACTGTTC
CTGACTATCTGGCGGGGAATGGTGTGGTTTATCAAACCAGTGATGTGAAGTATGTGATTGCCAACAACAACTTGTGGGCC
AGCCCGTTGGATCAACAGTTGCGCAACACCCTGGTTGCCAACCTGAGTACGCAACTGCCCGGCTGGGTGGTTGCCTCCCA
GCCTCTGGGAAGCGCCCAGGACACGCTCAATGTTACCGTAACGGAGTTTAACGGTCGCTATGATGGCAAGGTCATTGTCA
GTGGTGAGTGGCTGTTGAACCACCAGGGACAACTGATCAAACGTCCGTTCCGTCTGGAAGGAGTGCAAACTCAGGATGGT
TACGATGAGATGGTTAAAGTGCTGGCCGGTGTCTGGAGTCAGGAAGCCGCTTCTATTGCACAAGAGATAAAGCGTCTACC
TTAA

Upstream 100 bases:

>100_bases
GAGAACTGCAACCGGTGCTGAAAACGCTCAATGAGAAGAGTAACGCGCTGGTATTTGAAGCGAAGGACAAAAAAGATCCA
GAGCCGAAGAGGGCGAAACA

Downstream 100 bases:

>100_bases
TTATAAAGATTTGTAAATATAACCGTCTCCGGTATGTTGCCTGAGGCGGTTTTTTTGTCTCTAACGTGCGGAAAAATTTG
TTCCTCTTCACATTTTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP

Sequences:

>Translated_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP
>Mature_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLAGVWSQEAASIAQEIKRLP

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=187, Percent_Identity=100, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMBA_ECOLI (P0AB10)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64835
- RefSeq:   AP_001582.1
- RefSeq:   NP_415472.2
- ProteinModelPortal:   P0AB10
- DIP:   DIP-48221N
- STRING:   P0AB10
- EnsemblBacteria:   EBESCT00000001227
- EnsemblBacteria:   EBESCT00000015410
- GeneID:   946972
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5127
- KEGG:   eco:b0952
- EchoBASE:   EB3483
- EcoGene:   EG13719
- eggNOG:   COG3009
- GeneTree:   EBGT00050000011309
- HOGENOM:   HBG390938
- OMA:   ASNNLWA
- ProtClustDB:   CLSK879858
- BioCyc:   EcoCyc:G6492-MONOMER
- Genevestigator:   P0AB10
- InterPro:   IPR005586

Pfam domain/function: PF03886 DUF330

EC number: NA

Molecular weight: Translated: 20635; Mature: 20635

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
QEIKRLP
HHHHCCC
>Mature Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
QEIKRLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503