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The map label for this gene is rnk

Identifier: 157160106

GI number: 157160106

Start: 679638

End: 680048

Strand: Reverse

Name: rnk

Synonym: EcHS_A0661

Alternate gene names: 157160106

Gene position: 680048-679638 (Counterclockwise)

Preceding gene: 157160107

Following gene: 157160104

Centisome position: 14.65

GC content: 54.74

Gene sequence:

>411_bases
ATGTCCAGACCAACTATCATCATTAACGACCTGGATGCCGAACGCATCGATATTCTGCTGGAGCAACCCGCCTATGCTGG
TTTGCCAATCGCCGACGCGTTAAACGCAGAGTTGGATCGCGCCCAAATGTGTTCGCCAGAAGAGATGCCACACGACGTGG
TGACAATGAACAGCCGGGTTAAATTCCGCAATCTTAGCGATGGCGAAGTGCGTGTGCGCACGCTGGTGTATCCGGCAAAA
ATGACCGATAGCAATACTCAGCTTTCCGTTATGGCTCCGGTAGGTGCCGCACTGCTGGGGCTGCGCGTTGGCGATTCCAT
TCACTGGGAACTTCCGGGCGGCGTTGCAACCCACCTTGAAGTGCTGGAACTCGAATACCAGCCAGAAGCTGCTGGCGACT
ACCTGCTTTAA

Upstream 100 bases:

>100_bases
GTATCATCATGTGAGTTAAACCCTCGCCGCCTGACGGTGAGGGTTTTCTTTTGGGTATGTTTATCTGCGACACTCGCAGT
ACCGACGACATGGAGTAAAA

Downstream 100 bases:

>100_bases
TCCCATCTGCACAAGCGATAACTCGCTTTGCCCAGAGGATGCACTCGCATCCTCTTTACGCAAAATCAGCAATTTTTCCT
GGTTCTCACTGTTCACTTTT

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK
MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL

Sequences:

>Translated_136_residues
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK
MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
>Mature_135_residues
SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKM
TDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=100, Blast_Score=277, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNK_ECO57 (P0AFW6)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A90710
- PIR:   E85560
- RefSeq:   NP_286337.1
- RefSeq:   NP_308676.1
- ProteinModelPortal:   P0AFW6
- SMR:   P0AFW6
- EnsemblBacteria:   EBESCT00000028104
- EnsemblBacteria:   EBESCT00000060066
- GeneID:   917008
- GeneID:   957633
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0754
- KEGG:   ecs:ECs0649
- GeneTree:   EBGT00050000009799
- HOGENOM:   HBG753387
- OMA:   AAGEYHR
- ProtClustDB:   PRK05753
- BioCyc:   ECOL83334:ECS0649-MONOMER
- InterPro:   IPR001437
- Gene3D:   G3DSA:3.10.50.30

Pfam domain/function: PF01272 GreA_GreB

EC number: NA

Molecular weight: Translated: 14927; Mature: 14796

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV
CCCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE
EEECCCCCCEEEEEEEEECEECCCCCEEEEECCCCHHHHEEECCCEEEEECCCCHHCEEE
VLELEYQPEAAGDYLL
EEEEEECCCCCCCCCC
>Mature Secondary Structure 
SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV
CCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE
EEECCCCCCEEEEEEEEECEECCCCCEEEEECCCCHHHHEEECCCEEEEECCCCHHCEEE
VLELEYQPEAAGDYLL
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796