Definition | Escherichia coli HS, complete genome. |
---|---|
Accession | NC_009800 |
Length | 4,643,538 |
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The map label for this gene is ybdD
Identifier: 157160095
GI number: 157160095
Start: 668263
End: 668460
Strand: Direct
Name: ybdD
Synonym: EcHS_A0650
Alternate gene names: 157160095
Gene position: 668263-668460 (Clockwise)
Preceding gene: 157160094
Following gene: 157160097
Centisome position: 14.39
GC content: 52.02
Gene sequence:
>198_bases ATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAA CTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACG CGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAA
Upstream 100 bases:
>100_bases CGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAA CATGGTTAGCGGAGGCCAAG
Downstream 100 bases:
>100_bases ATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGT AATGAATGGACTCCACCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 65; Mature: 65
Protein sequence:
>65_residues MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC
Sequences:
>Translated_65_residues MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC >Mature_65_residues MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC
Specific function: Unknown
COG id: COG2879
COG function: function code S; Uncharacterized small protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yjiX
Homologues:
Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=100, Blast_Score=139, Evalue=3e-35, Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=73.134328358209, Blast_Score=105, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YBDD_ECOL6 (P0AAT0)
Other databases:
- EMBL: AE014075 - RefSeq: NP_752617.1 - ProteinModelPortal: P0AAT0 - EnsemblBacteria: EBESCT00000043779 - GeneID: 1035607 - GenomeReviews: AE014075_GR - KEGG: ecc:c0686 - GeneTree: EBGT00050000009874 - HOGENOM: HBG668379 - OMA: TYVEHMQ - ProtClustDB: CLSK893984 - InterPro: IPR007423
Pfam domain/function: PF04328 DUF466
EC number: NA
Molecular weight: Translated: 7468; Mature: 7468
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 7.7 %Met (Translated Protein) 10.8 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 7.7 %Met (Mature Protein) 10.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC GARCC CCCCC >Mature Secondary Structure MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC GARCC CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157