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The map label for this gene is fimZ [H]

Identifier: 157160059

GI number: 157160059

Start: 623386

End: 624018

Strand: Reverse

Name: fimZ [H]

Synonym: EcHS_A0610

Alternate gene names: 157160059

Gene position: 624018-623386 (Counterclockwise)

Preceding gene: 157160060

Following gene: 157160052

Centisome position: 13.44

GC content: 36.49

Gene sequence:

>633_bases
ATGAAACCAACGTCGGTGATCATTATGGATACTCATCCTATCATCAGAATGTCTATTGAAGTTCTGTTGCAAAAAAACAG
TGAATTGCAGATTGTCCTGAAAACGGATGATTACCGCATAACCATCGATTATCTCCGAACCCGTCCTGTTGATTTAATCA
TTATGGATATAGACTTGCCCGGAACAGACGGTTTTACCTTCCTGAAAAGGATCAAACAAATCCAGAGCACAGTGAAAGTG
TTATTTTTATCATCGAAATCAGAATGCTTTTATGCTGGCAGAGCGATACAAGCTGGTGCTAACGGTTTTGTCAGTAAATG
CAATGATCAGAATGATATTTTTCATGCCGTTCAGATGATCCTCTCCGGATACACGTTTTTTCCTAGCGAAACGCTTAACT
ATATAAAAAGCAATAAATGTAGTACGAATAGTTCAACGATCACTGTGCTATCTAATCGTGAAGTGACCATATTACGTTAT
CTGGTTAGCGGATTATCTAATAAAGAAATTGCCGATAAGTTATTACTTAGCAATAAAACAGTTAGTGCGCATAAATCTAA
TATTTATGGCAAGCTAGGTTTGCATTCAATTGTAGAGCTTATCGACTACGCCAAATTATACGAATTAATATAA

Upstream 100 bases:

>100_bases
ACCGCTGCGCGTCTGAATCAAGAAAACCCGTATTTTCATGTATCAAAGTACAATTTACCGCCCTAACGGAAAATTGTCCG
CTCCTATGAGACTGGTAACT

Downstream 100 bases:

>100_bases
TATTAATTATAATTGATCATAAATATCGCATCCGCTTTCGCCACACCTGGCCGAACACCGCTGGCTAACGCTCGATAATT
GGCAAAAAAGTTTAGTGTGA

Product: transcriptional regulator FimZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV
LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRY
LVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI

Sequences:

>Translated_210_residues
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV
LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRY
LVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI
>Mature_210_residues
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV
LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRY
LVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=210, Percent_Identity=99.5238095238095, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1788712, Length=201, Percent_Identity=32.3383084577114, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788222, Length=205, Percent_Identity=27.8048780487805, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=28.5, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790102, Length=196, Percent_Identity=29.5918367346939, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788546, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787473, Length=187, Percent_Identity=24.0641711229947, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23678; Mature: 23678

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLP
CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEECC
GTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI
CCCHHHHHHHHHHHHHHHHEEEECCCCCEEEECCEEECCCCCHHHCCCCCHHHHHHHHHH
LSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKT
HCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCC
VSAHKSNIYGKLGLHSIVELIDYAKLYELI
CCHHCCCCEECHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLP
CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEECC
GTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI
CCCHHHHHHHHHHHHHHHHEEEECCCCCEEEECCEEECCCCCHHHCCCCCHHHHHHHHHH
LSGYTFFPSETLNYIKSNKCSTNSSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKT
HCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCC
VSAHKSNIYGKLGLHSIVELIDYAKLYELI
CCHHCCCCEECHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]