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The map label for this gene is ybbJ

Identifier: 157160017

GI number: 157160017

Start: 580567

End: 581025

Strand: Reverse

Name: ybbJ

Synonym: EcHS_A0567

Alternate gene names: 157160017

Gene position: 581025-580567 (Counterclockwise)

Preceding gene: 157160018

Following gene: 157160013

Centisome position: 12.51

GC content: 57.3

Gene sequence:

>459_bases
ATGATGGAGTTAATGGTCGTTCATCCACATATTTTCTGGCTCAGTCTCGGCGGTTTGCTGCTGGCAGCCGAGATGCTGGG
CGGAAATGGTTATTTGTTGTGGAGCGGCGTGGCAGCGGTGATTACCGGCCTGGTGGTCTGGCTGGTGCCGCTGGGTTGGG
AGTGGCAAGGGGTAATGTTTGCCATCCTGACGCTGCTCGCCGCCTGGCTGTGGTGGAAATGGTTGTCGCGGCGGGTGCGC
GAACAAAAGCACAGCGATAGTCATTTAAACCAGCGCGGGCAGCAGCTGATTGGCCGACGTTTTGTGCTGGAATCTCCGCT
GGTCAACGGGCGCGGTCATATGCGCGTCGGTGACAGTTCATGGCCTGTCAGCGCCAGCGAGGATCTCGGTGCAGGTACGC
ATGTTGAAGTCATTGCGATAGAAGGGATAACCCTACATATCCGAGCCGTCTCGTCTTAA

Upstream 100 bases:

>100_bases
GCAAAGTAGTGATGATGCCATTAGAGGCCAGCAGCCTGATGGGGTCGATTGCCGGGATTGCCGAGCTGGTGAAAGACAGC
GCCAACAAACGGACTCAGCC

Downstream 100 bases:

>100_bases
TCACCCTGCCCGATGATGACAGCAGCCGGAGAGATTTTCGATAATCGGGCAGTCGGCGCTGTCATCGCCAGGGCAGGCAT
TCGCCAGTGCCAGCAGCTGG

Product: nodulation efficiency family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVR
EQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS

Sequences:

>Translated_152_residues
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVR
EQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
>Mature_152_residues
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVR
EQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0826

Homologues:

Organism=Escherichia coli, GI145693099, Length=152, Percent_Identity=100, Blast_Score=297, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBBJ_ECOLI (P0AAS3)

Other databases:

- EMBL:   U82664
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64779
- RefSeq:   AP_001137.1
- RefSeq:   NP_415021.2
- ProteinModelPortal:   P0AAS3
- SMR:   P0AAS3
- STRING:   P0AAS3
- EnsemblBacteria:   EBESCT00000002071
- EnsemblBacteria:   EBESCT00000015504
- GeneID:   945126
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5065
- KEGG:   eco:b0488
- EchoBASE:   EB3045
- EcoGene:   EG13257
- eggNOG:   COG1585
- GeneTree:   EBGT00050000011641
- HOGENOM:   HBG473888
- OMA:   DEPFLNQ
- ProtClustDB:   CLSK879682
- BioCyc:   EcoCyc:G6264-MONOMER
- Genevestigator:   P0AAS3
- InterPro:   IPR012340
- InterPro:   IPR002810
- Gene3D:   G3DSA:2.40.50.140

Pfam domain/function: PF01957 NfeD

EC number: NA

Molecular weight: Translated: 16939; Mature: 16939

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12b3e42c)-; HASH(0x12b8e6e0)-; HASH(0x12fed688)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMF
CCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEHHCHHHHHHHHHHHHHCCCCCCHHHHH
AILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
WPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
CCCCCCCCCCCCCEEEEEEECCEEEEEEEECH
>Mature Secondary Structure
MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMF
CCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEHHCHHHHHHHHHHHHHCCCCCCHHHHH
AILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVNGRGHMRVGDSS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
WPVSASEDLGAGTHVEVIAIEGITLHIRAVSS
CCCCCCCCCCCCCEEEEEEECCEEEEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503