Click here to switch to the map view.

The map label for this gene is fni

Identifier: 156980661

GI number: 156980661

Start: 2472604

End: 2473653

Strand: Reverse

Name: fni

Synonym: SAHV_2330

Alternate gene names: 156980661

Gene position: 2473653-2472604 (Counterclockwise)

Preceding gene: 156980662

Following gene: 156980657

Centisome position: 85.89

GC content: 37.81

Gene sequence:

>1050_bases
ATGAGTGATTTTCAAAGAGAACAGAGAAAAAATGAACATGTTGAAATAGCAATGGCCCAATCTGACGCAATGCATTCAGA
TTTTGATAAGATGCGTTTTGTGCATCATTCTATCCCATCAATTAATGTAAATGATATCGATTTGACATCACAGACGCCTG
ACTTAACGATGGCATATCCGATTTATATTAATGCAATGACGGGTGGTAGCGAGTGGACGAAAAACATCAATGAAAAGCTA
GCTGTAGTTGCAAGAGAAACTCGCTTAGCGATGGCAGTTGGATCAACACATGCGGCATTGAGAAATCCACGCATGGCTGA
GACGTTTACGATTGCGCGAAAAATGAATCCTGAAGGCATGATTTTTAGCAATGTTGGTGCGGACGTACCAGTAGAAAAGG
CTTTGGAAGCAGTTGAATTACTTGAGGCACAAGCGTTACAAATCCATGTTAATTCTCCTCAAGAATTAGTTATGCCTGAA
GGGAATCGTGAATTTGTGACTTGGTTAGATAATATAGCGTCGATTGTATCACGAGTGTCTGTTCCAGTCATTATAAAAGA
AGTTGGATTTGGTATGAGCAAAGAATTAATGCATGACTTACAACAAATAGGCGTCAAGTATGTCGATGTTAGTGGCAAAG
GTGGTACTAACTTTGTAGATATTGAAAATGAACGTCGTGCAAATAAAGATATGGATTACTTATCATCATGGGGACAGTCT
ACAGTTGAGTCATTACTTGAAACAACGGCTTATCAAAGCGAAATTTCAGTTTTCGCGAGTGGTGGTTTACGTACACCACT
CGATGCAATTAAAAGTTTAGCACTTGGTGCAAAGGCAACTGGTATGTCACGTCCGTTTTTAAATCAAGTTGAAAATAATG
GCATTGCACATACAGTAGCTTATGTAGAATCATTTATTGAACACATGAAATCAATAATGACGATGTTAGATGCTAAAAAT
ATTGACGACTTAACACAAAAACAAATCGTATTTAGTCCGGAAATAATGTCATGGATAGAACAACGTAGCTTGAATATACA
TCGAGGATAA

Upstream 100 bases:

>100_bases
TTGCTTAGCTGTAATGTTTGTTATAGCTGTCGTATTAATCATCTTTTTCAGACGTAAAAAATGGTTTTAAATTAGAAATG
ACGAAAAGGTAGGTTTAATC

Downstream 100 bases:

>100_bases
ATAAAAGAGGAGGCGGAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGAATGAATCCCATAATGAC
TATAACACCAATTAAATCGA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPIYINAMTGGSEWTKNINEKL
AVVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPE
GNREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKN
IDDLTQKQIVFSPEIMSWIEQRSLNIHRG

Sequences:

>Translated_349_residues
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPIYINAMTGGSEWTKNINEKL
AVVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPE
GNREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKN
IDDLTQKQIVFSPEIMSWIEQRSLNIHRG
>Mature_348_residues
SDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPIYINAMTGGSEWTKNINEKLA
VVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEG
NREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQST
VESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKNI
DDLTQKQIVFSPEIMSWIEQRSLNIHRG

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_STAA1 (A7X5W0)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442920.1
- ProteinModelPortal:   A7X5W0
- SMR:   A7X5W0
- STRING:   A7X5W0
- EnsemblBacteria:   EBSTAT00000004245
- GeneID:   5559263
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_2330
- eggNOG:   COG1304
- GeneTree:   EBGT00050000024937
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   SAUR418127:SAHV_2330-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38875; Mature: 38744

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
CCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEE
IYINAMTGGSEWTKNINEKLAVVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCE
IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
EEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHEECCCCCHHHHHHHHHHHHHHHHHC
VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
HHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEECCCHHCCCCCHHHHHHCCHH
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHH
YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEIMSWIEQRSLNIHRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
CHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEE
IYINAMTGGSEWTKNINEKLAVVARETRLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCE
IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
EEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHEECCCCCHHHHHHHHHHHHHHHHHC
VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
HHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEECCCHHCCCCCHHHHHHCCHH
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHH
YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEIMSWIEQRSLNIHRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA