Click here to switch to the map view.

The map label for this gene is yijO [C]

Identifier: 156980613

GI number: 156980613

Start: 2421169

End: 2423124

Strand: Reverse

Name: yijO [C]

Synonym: SAHV_2282

Alternate gene names: 156980613

Gene position: 2423124-2421169 (Counterclockwise)

Preceding gene: 156980615

Following gene: 156980612

Centisome position: 84.13

GC content: 27.86

Gene sequence:

>1956_bases
ATGACAGATAATTATTCACTACATATTTATAAAAGTATGAAAATGAGTAGTGTGAAGGAAGCGAACTTAAAAATTATATA
TTGGCTACAAGGTACAGGTGTAGTTTCAATCAATCTACAACAATATGATGTAAAAAGAAATGATGTCACCGTTATTATGT
TGAATGATTTGTATCAAATTGATGGTCATGATGATAGTGTATGTTGTGTTGTTGAAGTAAGTGCAAAGACATTTTTGAAG
TTTATGAATGCAAACTATATGATGCGTGGCAAGATATTAACAAATGAGGTTGCTAGCACTTTTAGAATCTTGATTAAGTA
TTTAATCTACAGCAAAATTAAACAACAGTCTTATAATGCTAATGATAAGATTATTAATTACATGTGTGTTGAATTAATGT
CATTAAATACATACGATGGTAGTCGTCATTTAGTAGCCGAAGAAGTGCACGATTATTTAACAAACAACCACCATAAAAAG
ATAAATAGGAAAGATGTCATTAATCAAGTTAGTATTACAAACAAAGCTTTAAGTGACATGTTTAAAGCGACACCTTATAG
TAATTTTATTCAATATTTAAATCATATTAGACTGGAGCATTGCTTAATTGATATTTTAACTTCTAAGAAGCCTATTGAAG
AAATCGCAAGTAGTCATGGTTTTAATCATTATTCTCGTTTTATACACCTCTTTAAAGAAACGTATGGTAACACTCCTAAA
TTAATTAGAAAAAGATATAGTCCAACATCTCATTCAATTAACCATTCCCAATTAGTTGAAATTGATAAAAATATAATTGA
ATTATTTGATAATACTAATCAAAGTTCTTCAAGTATGCGCGAGATTGATATACCTTTTGAACCTACAAAAAGGAGTCAAA
TGTATCAACCTAAAAACATTTATATTAAAGGAAGTAATTTTTATTGGATGGATTATTATACTATTAAACAAATCATTCAA
AGATTAGGTGTTAATCTTGAAAACTTGCATATAATTGTTACAATCGACACAAGCAATGAGCTATCGATTGAACAAATCAC
TTTATTACTTCAAAAGATAGTGAATTACAATGTAAATGTAGTATTTCGTATTAAACATGAATATAAGGAATTGTTAACGA
GTACTGAAAGAGGCAAGATAGAAAAGCTAGTAGCCACAATTTTTAATATGACATTTGAGAGTAATAGATGTAAGATTGCA
TTTTTAATTAACGACTTAAATACTACTGCAATTCAAAAACTGAAACGCTTAATAGATAATTATATAGGAGTATTTGAATT
AATATATCATCTGGAACCAAAAGAGTTGAATACGCACTATGATAAAGAAATTGATCATCTAATAGACTATTTTATCTTAC
CGCTAAGACAAATAGAACAGGTGTCTATTGCATGTTCTAAAATTATATGTGATGTAGATTTGATTAATGAGAATAATGAC
TTAAAAGAAAAAATCACAATGTCTGATTTTAATAAGGTTACTGAACTTTTGACAAATTATACAAAATTTCGAGGACTTAT
TATGCACATGTCAATTATAAGTGAAGCTAGCAAAGAAATAAATTTGACTAGATTATCAATATTCATTTTTATCATAAATA
TACTTAATCAATTACGAGGGATTGTTATTTATCAAAATGACACGATGATTGTAACGAAGTTCAAACATGAAGTACAATGT
GTCATTTGTTTGCCAGCCGCATTGTTAAATGAGAATTCAGCCGCTATACGTTTATCGTGTAAGGGTCTTCAACAATTTAG
CCATGCTAAAACTAAACAAATTGTTTTAAGTATAGATAAAGATAATCATACTTCCGAAAATGGTGTACTTGTGAATGATA
TTATGCAACAACACAGTTATTGGAAAGCTAATTTTATAGAAAGAAATATTTATGATCATTCATTAATGGTCTCAAGCAAT
AGTATTGTTCATTTGAAATATCATCTTGAGATATAG

Upstream 100 bases:

>100_bases
ATGTGGCGATATAATTGGTAGTGAATATTAGATGTTGACAATTGATTTGAGAAAGACAAACAGGAGTAAATCAATATATT
TGTATATGTGAGGATGTAAG

Downstream 100 bases:

>100_bases
GCATGGTTTAAGAGAGGTTTTAAAGATGTCTAAATTTAAAGTTAAGCGTTTAACTGCACACATACTAATGTTGAAAGTCA
TTAATGATATGTTGAAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcription Regulator

Number of amino acids: Translated: 651; Mature: 650

Protein sequence:

>651_residues
MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQIDGHDDSVCCVVEVSAKTFLK
FMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNANDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKK
INRKDVINQVSITNKALSDMFKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
LIRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNIYIKGSNFYWMDYYTIKQIIQ
RLGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNVVFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIA
FLINDLNTTAIQKLKRLIDNYIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENND
LKEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRGIVIYQNDTMIVTKFKHEVQC
VICLPAALLNENSAAIRLSCKGLQQFSHAKTKQIVLSIDKDNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSN
SIVHLKYHLEI

Sequences:

>Translated_651_residues
MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQIDGHDDSVCCVVEVSAKTFLK
FMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNANDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKK
INRKDVINQVSITNKALSDMFKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
LIRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNIYIKGSNFYWMDYYTIKQIIQ
RLGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNVVFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIA
FLINDLNTTAIQKLKRLIDNYIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENND
LKEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRGIVIYQNDTMIVTKFKHEVQC
VICLPAALLNENSAAIRLSCKGLQQFSHAKTKQIVLSIDKDNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSN
SIVHLKYHLEI
>Mature_650_residues
TDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQIDGHDDSVCCVVEVSAKTFLKF
MNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNANDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKI
NRKDVINQVSITNKALSDMFKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPKL
IRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNIYIKGSNFYWMDYYTIKQIIQR
LGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNVVFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIAF
LINDLNTTAIQKLKRLIDNYIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENNDL
KEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRGIVIYQNDTMIVTKFKHEVQCV
ICLPAALLNENSAAIRLSCKGLQQFSHAKTKQIVLSIDKDNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNS
IVHLKYHLEI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75977; Mature: 75846

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQI
CCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEECEEEE
DGHDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
CCCCCCEEEEEEECHHHHHHHHCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
LIRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEE
YIKGSNFYWMDYYTIKQIIQRLGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
EEECCCEEEEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
VFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
EEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH
YIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENND
HHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCC
LKEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSAAIRLSCKGLQQFSHAKTKQIVLSIDK
EEEEECCEEEEEEECCCEEEEEEECHHHHCCCCCEEEEEEHHHHHHHCCCCEEEEEEEEC
DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
CCCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCEEEEEEEEEC
>Mature Secondary Structure 
TDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQI
CCCEEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEECEEEE
DGHDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
CCCCCCEEEEEEECHHHHHHHHCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
LIRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEE
YIKGSNFYWMDYYTIKQIIQRLGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
EEECCCEEEEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
VFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
EEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH
YIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENND
HHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCC
LKEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSAAIRLSCKGLQQFSHAKTKQIVLSIDK
EEEEECCEEEEEEECCCEEEEEEECHHHHCCCCCEEEEEEHHHHHHHCCCCEEEEEEEEC
DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
CCCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA