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The map label for this gene is ydbM [H]

Identifier: 156980600

GI number: 156980600

Start: 2411462

End: 2412616

Strand: Reverse

Name: ydbM [H]

Synonym: SAHV_2269

Alternate gene names: 156980600

Gene position: 2412616-2411462 (Counterclockwise)

Preceding gene: 156980601

Following gene: 156980599

Centisome position: 83.77

GC content: 34.46

Gene sequence:

>1155_bases
ATGAATGATATGGATAATTCCTTTTTAATAACAACGGAAATTCAAAGAAAATGGATTGAAAAATTCAAAGTAATTAGAGA
TACATTTAAGGCTAAAGCTGAATATAATGATCAACATAGCCAATTTCCATATAAAAATATTGAATGGTTAATTAAAGAAG
GTTATGGAAAATTAACGTTACCAAAAGCATATGGTGGTGAAGGTGCGACCATAGAAGACATGGTTATTTTGCAATCATTT
TTAGGCGAACTTGATGGTGCCACAGCATTATCTATTGGTTGGCATGTGAGTGTCGTAGGACAAATTTATGAACAGAAATT
ATGGTCTCAAGATATGTTGGAGCAATTTGCTGTTGAAATTAATAATGGTGCATTAGTTAATAGAGCAGTTAGTGAAGCTG
AAATGGGTAGTCCAACAAGAGGGGGAAGACCAAGTACACATGCTGTTAAAGCTGATGATGGGTATATTTTAAATGGTGTG
AAGACATATACATCAATGAGTAAAGCACTAACACATATTATTGTTGCTGCTTATATAGAAGAATTAGAAAGTGTTGGTTT
TTTCTTAGTAGACAGGAATTTGCCTGGTGTTGAAATTGCCGATAATTGGGACGTATTAGGTATGCGAGCGACAGAAAGTC
ATGATTTAATATTAAATGATGTAAAAGTACCATTAAAACATTTAGTGGAAACAGAGAAAAGTAAAGCGCCAAATGGTTGG
ATATTGCATATACCAAGCTGTTATTTAGGTATAGCACAAGCTGCTAGAAATTATGCTGTAGACTTTGCAATCCAACATAG
CCCTAATAGTATTGAAGGAACGATTGCAACATTGCCAACTGTGCAACAAAATTTAGGGAAAATGGAAACGCTATTGTTAT
GTGCGAGACAATTTTTATGGAGTACAGCAAAAGGGTATCAACAATATAAAGATGACAGTCAGATAAGAAATCCAACAAGT
GCGAGTAAAGTGATGGTAATGAATCAAGGGCTTGAAGTGATTGATTTAGCGATGAGAATAGTTGGTGCTAAAAGCTTAGA
AATGAATCGACCATTACAACGTTACTATCGTGACATGCGTGCAGGATTACACAATCCACCTATGGAAGATGCAGCATATA
CAAATATTGCTAAGAGTATTACAGATACATTTTAA

Upstream 100 bases:

>100_bases
TTTCTTTTAATTGTTCACAGCACGTTCCTTTTTATTTTTAAAGTCGAGTGTTAAACTAGGAATAAATAATTTATATTGTG
TGTTGTGTGGGGTGACTAAT

Downstream 100 bases:

>100_bases
ATTTAAAAAGGTAAATCGATCGTTGATTGGCATAAAGAGATGAAATTTGACGTTCGGATTTACCCTTTTTTGTGGGGATT
TATAGGGATGTTAAGATATT

Product: hypothetical protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLWSTAKGYQQYKDDSQIRNPTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSITDTF

Sequences:

>Translated_384_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLWSTAKGYQQYKDDSQIRNPTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSITDTF
>Mature_384_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLWSTAKGYQQYKDDSQIRNPTS
ASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSITDTF

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=379, Percent_Identity=22.9551451187335, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI4557233, Length=349, Percent_Identity=24.0687679083095, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4501859, Length=359, Percent_Identity=22.2841225626741, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI226958414, Length=320, Percent_Identity=23.125, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=326, Percent_Identity=25.7668711656442, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508101, Length=335, Percent_Identity=20.5970149253731, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24646207, Length=347, Percent_Identity=26.5129682997118, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21355753, Length=322, Percent_Identity=25.1552795031056, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21356377, Length=345, Percent_Identity=25.5072463768116, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 43001; Mature: 43001

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLW
EEECCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
STAKGYQQYKDDSQIRNPTSASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMR
HHHHHHHHHCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
AGLHNPPMEDAAYTNIAKSITDTF
CCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLW
EEECCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
STAKGYQQYKDDSQIRNPTSASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMR
HHHHHHHHHCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
AGLHNPPMEDAAYTNIAKSITDTF
CCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]