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The map label for this gene is yqfA [C]

Identifier: 156980485

GI number: 156980485

Start: 2312538

End: 2313224

Strand: Reverse

Name: yqfA [C]

Synonym: SAHV_2154

Alternate gene names: 156980485

Gene position: 2313224-2312538 (Counterclockwise)

Preceding gene: 156980486

Following gene: 156980484

Centisome position: 80.32

GC content: 31.88

Gene sequence:

>687_bases
ATGATGTCCAAATCAACTAAAAAAAGTAATGACACAATCGTAGAAACATTTAAGGATATCATCCCTTTATCATTTGGAGA
AGAAATTGGTAATGCGGCATCTCATGGTGTTGCAGCTTTGTTAACATTATTAGTGTTACCCTATGCGGCTGTGCACAGTT
ATATTGCACATGGTACGCTTGCGTCTGTGAGTATGTCTATTTATGTTATTTCTATCTTTATGATGTTTATTTCATCTACT
ATTTATCATTCTATGCAAAATGAAACACCTCATAAATATATTTTAAGGATTATCGATCACAGTATGATTTACGTAGCAAT
TTCTGGTACATATACGCCTATTTTGTTAACAGTTGTAGGTGGTTGGATAGGTTGGACAGTATTTATTTTATTATGGGGAA
CGACACTTTGGGGGATTTTATATAAATCCATAGCTGTCAAAGTTAACCAAAAGTTAAGCTTAATTGTCTATTTAGTGATG
GGCTGGGTAGGTATTATCTTGTTACCAATTATTTTTATTCGCACATCATGGATATTCATATTATTCATTTTCTTAGGTGG
TGTGTCTTATACAATTGGTGCATGGTTTTATGCACAAAAGAATAGACCATATTTTCATATGATTTGGCATATTTTTATTG
TAATAGCATCACTATTGCATTTAATTGCGATCTTATATTTTATGTAG

Upstream 100 bases:

>100_bases
AGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAACTGCAACAGAAGATTTACGTAGAATGGGTTTAA
TTTAATGATAGGCGGTGACT

Downstream 100 bases:

>100_bases
TCGTTTAGAAAAGCTGGGGGAAACTCCGCTTTTTTTATTACATAAATCATTCTAATAGGGGATTGTATTGTAATAGAATT
ATCGTTAAGATTTGAAAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MMSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISST
IYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVM
GWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM

Sequences:

>Translated_228_residues
MMSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISST
IYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVM
GWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
>Mature_228_residues
MMSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISST
IYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVM
GWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=202, Percent_Identity=33.1683168316832, Blast_Score=111, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=29.0476190476191, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25807; Mature: 25807

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTL
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHH
GWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
HHHHHHCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MMSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTL
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHH
GWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
HHHHHHCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]