Click here to switch to the map view.

The map label for this gene is sceD

Identifier: 156980411

GI number: 156980411

Start: 2228428

End: 2229123

Strand: Reverse

Name: sceD

Synonym: SAHV_2080

Alternate gene names: 156980411

Gene position: 2229123-2228428 (Counterclockwise)

Preceding gene: 156980412

Following gene: 156980410

Centisome position: 77.4

GC content: 39.08

Gene sequence:

>696_bases
ATGAAGAAAACATTACTCGCATCATCATTAGCAGTAGGTTTAGGAATCGTAGCAGGAAATGCAGGTCACGAAGCCCATGC
AAGTGAAGCGGACTTAAATAAAGCATCTTTAGCGCAAATGGCGCAATCAAATGATCAAACATTAAATCAAAAACCAATTG
AAGCTGGGGCTTATAATTATACATTTGACTATGAAGGGTTTACTTATCACTTTGAATCAGATGGTACACACTTTGCTTGG
AATTACCATGCAACAGGTGCTAATGGAGCAAACATGAGTGCACAAGCACCTGCAACTAATAATGTTGAACCATCAGCTGT
TCAAGCTAATCAAGTACAATCACAAGAAGTTGAAGCACCACAAAATGCTCAAACTCAACAACCACAAGCATCAACATCAA
ACAATTCACAAGTTACTGCAACACCAACTGAATCAAAAGCATCAGAAGGTTCATCAGTAAATGTGAATGCTCATCTAAAA
CAAATTGCTCAACGTGAATCAGGTGGCAATATTCATGCTGTAAATCCAACATCAGGTGCAGCTGGTAAGTATCAATTCTT
ACAATCAACTTGGGATTCAGTAGCACCTGCTAAATATAAAGGTGTATCACCAGCAAATGCTCCTGAAAGTGTTCAAGATG
CCGCAGCAGTAAAATTATATAACACTGGTGGCGCTGGACATTGGGTTACTGCATAA

Upstream 100 bases:

>100_bases
TTTTTTATTTTGTTGTAACCTGCACGGATTTTATAGATGTTACAGTAGTCTCTGTAAAACTTTTAGAGAAACAAATTACT
TGTAGGAGGATTTTAAGATT

Downstream 100 bases:

>100_bases
GCCATTTATGCATAGCTAATCAATAGTTATATAAGTAACTTTTAGATCGGAATATATCGGGGAATTCTCGATATGTTCCG
GTCTTTTTTATTTCGCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA

Sequences:

>Translated_231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
>Mature_231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA

Specific function: Is able to cleave peptidoglycan and affects clumping and separation of bacterial cells

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase family. SceD subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCED_STAA1 (A7X4T4)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442670.1
- ProteinModelPortal:   A7X4T4
- SMR:   A7X4T4
- STRING:   A7X4T4
- EnsemblBacteria:   EBSTAT00000003167
- GeneID:   5560376
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_2080
- eggNOG:   NOG144953
- GeneTree:   EBGT00050000023704
- HOGENOM:   HBG693910
- OMA:   QSTTQEQ
- ProtClustDB:   CLSK885764
- BioCyc:   SAUR418127:SAHV_2080-MONOMER
- InterPro:   IPR010618

Pfam domain/function: PF06737 Transglycosylas

EC number: NA

Molecular weight: Translated: 24077; Mature: 24077

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNY
CCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
TFDYEGFTYHFESDGTHFAWNYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAP
EEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
QNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGA
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCC
AGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNY
CCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
TFDYEGFTYHFESDGTHFAWNYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAP
EEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
QNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGA
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCC
AGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA