Click here to switch to the map view.

The map label for this gene is ydbT [H]

Identifier: 156980389

GI number: 156980389

Start: 2201911

End: 2203494

Strand: Reverse

Name: ydbT [H]

Synonym: SAHV_2058

Alternate gene names: 156980389

Gene position: 2203494-2201911 (Counterclockwise)

Preceding gene: 156980390

Following gene: 156980388

Centisome position: 76.51

GC content: 31.63

Gene sequence:

>1584_bases
ATGTCTGAACCTCAAAAATTACATCCGATTTCATATTTTAATGGCATAATCAATGCTATCAAACAAAACATAGTCGTCTT
TTTTATTTTCATTATCTTTCAATTGAAAGATTTTGATTATACGAATCCCGAATCATATTTATGGATAGGTATTGTATTTG
TATTCTTTTTAATATCATACATTTCTCAAATTGTCGGAATTATGAACACGCGATATTGGATTGAGGATAATTATTTCATT
TTAACAACAGGTATTTTTAATAAAAAGCGTAAAGAATTAAATATAAAACGTATTCAGTCCGTTGATATGACACAAGGGGT
CGTCAATCAAATTATTGGTGGTGTGGATTTACAAATCAAAACACCAAGTGATGGTATTGTCTTAAGTGTTATTTCGAAAA
AACAAGGTGAATATCTTGAACGATATATTGATCAATTGCAAACAGAGTTGAAGACAGAAGTGGCGCAAAAGTCTAGTGCT
GAGAAGAATGACAACTGTAATCATGACATTGAAGGTAATGTGGAAGACATCGCAGAAGGTCGCTTAGATGAAGTGCAGAA
CACTGATAGTATGCTTAATCAGAAAAATAAACGCATTCCTATATATCAGATGAATTTTAAAGAATCACTATTTATGGCAA
TGACCAGTGGCGCCATTGGTGTAACGTTAGCAGCTTTAGTACCGATTTACGGGGCTGTAAGAGAGTTGATCCCATGGTCG
AAGCTAAATCATGAAATTAGTCAATGGGTTCAAATTGTAAGTATTTCAGTATTAATCATCATTTTACTAGTATTAATAGT
GGCATATATTATTGGAACGATTATAACAATGATAAGATTTTATGGCTTTTCGGTGATGCTTGAAAATGAGCAACTTAAAA
TTGAATATGGTCTCTTTAACAAGAAGAAAGTAACTGTACCAACGAAACGATTGCAAGCTGTTGTTGAACGTCAGTCATAT
ATACGAAGATTATTTGGCTACACAGCAATACATTTTATCATCACAAGTGATTTTGAAAATAAAAAAATCGAAGATGATGA
CAATGATTCAGGTAGTGTGCCGATATTGCCGTTTATTAAACGAGACAAAGCATATCAAATTATCCAGAATTTAGTACCAG
ATTTATCTTATCAACAAGTTAATGAAGGTATGCCTTTGTCAGGTTTCCACAGACACTTTTTAATACCTAGTATTATTGTC
ATAGCTATGGCAGGTATTGGCTGTTATTTTTGGAATCAATTATTATTGTTATTTACGATTATAACAATAGTCATTATTGG
TTTATTTGTGATCAAAGGATATCTTTATGTCAAACATGCGGGTTTTAAAATGACAGAAGAACAAATTACTATCCAGAATT
TCGAGCTATTGAAACGAAATATTTATTATTTTAAAGCGCATCACATTATAGGATTTGACACTTGGCAACATACATTACTT
AAACGCAACAATTTAAATAATTTTAGCTTTATTGTTGCTAAAGGTGTGGGAGCCCAATCGATTAACCTAAAATACGCAAG
AAGTGAAGATGCAAATAAATTGAAATCATGGTATTTAAGAGGTGAAAATGATGAGGGATTATAA

Upstream 100 bases:

>100_bases
ATGACTGCAGGTCATACTATTTATTTACCGATGATGTCTCATGACGATGTTAAAATAATCGAAGCGAGAACTATGTCGAA
TTTGAGAGGGGTTGAAAGTG

Downstream 100 bases:

>100_bases
TTTTATGTCACCACACGCTAAAAAAGTGATGAGGTTAAGTGCTGTGCTGTTTTGGATACCCATAGCGCTTGTACTTTTAA
TCGCATTTAATATTTTGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 526

Protein sequence:

>527_residues
MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFI
LTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSA
EKNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWS
KLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSY
IRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIV
IAMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLL
KRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL

Sequences:

>Translated_527_residues
MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFI
LTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSA
EKNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWS
KLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSY
IRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIV
IAMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLL
KRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL
>Mature_526_residues
SEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFIL
TTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSAE
KNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWSK
LNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSYI
RRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIVI
AMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLLK
RNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL

Specific function: Unknown

COG id: COG3428

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0699 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005182
- InterPro:   IPR014529 [H]

Pfam domain/function: PF03703 DUF304 [H]

EC number: NA

Molecular weight: Translated: 60747; Mature: 60615

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ISQIVGIMNTRYWIEDNYFILTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIK
HHHHHHHHCCCEEEECCEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEE
TPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSAEKNDNCNHDIEGNVEDIAEG
CCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCC
RLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWS
CHHHHCCHHHHHHCCCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
KLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEECCCC
KKKVTVPTKRLQAVVERQSYIRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIK
CCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEHHHH
RDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIVIAMAGIGCYFWNQLLLLFTI
CCHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLL
HHHHHHHHHHHHHHHEEEECCCEECHHHHHHHHHHHHHHHHEEEEEEEEEEEHHHHHHHH
KRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL
HHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ISQIVGIMNTRYWIEDNYFILTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIK
HHHHHHHHCCCEEEECCEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEE
TPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSAEKNDNCNHDIEGNVEDIAEG
CCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCC
RLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWS
CHHHHCCHHHHHHCCCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
KLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEECCCC
KKKVTVPTKRLQAVVERQSYIRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIK
CCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEHHHH
RDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIVIAMAGIGCYFWNQLLLLFTI
CCHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLL
HHHHHHHHHHHHHHHEEEECCCEECHHHHHHHHHHHHHHHHEEEEEEEEEEEHHHHHHHH
KRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL
HHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]