Click here to switch to the map view.

The map label for this gene is ydiC [H]

Identifier: 156980367

GI number: 156980367

Start: 2174048

End: 2174737

Strand: Reverse

Name: ydiC [H]

Synonym: SAHV_2036

Alternate gene names: 156980367

Gene position: 2174737-2174048 (Counterclockwise)

Preceding gene: 156980368

Following gene: 156980366

Centisome position: 75.51

GC content: 34.93

Gene sequence:

>690_bases
ATGAACAAATTAAGGAGGCAATTATCCATGAATTCGCTGCTCATTGATACATCGAATCAACCATTATCAGTAGCATTGAT
GCAAAACGATGAAGTTTTAGCTGAAATAACTACGGATTCTAAACAAAATCATTCAGTGCAATTAATGCCTGCGATTAGTC
AGCTATTTGAGCAGAGCAAAATAGCTAAACAGCAATTAGATGCGATTATTGTTGCTGAAGGTCCTGGTTCATATACTGGC
TTACGTATCGGTGTTACTGTTGCTAAAACATTAGCGTATGCGTTAGATGTTAAATTATATGGTGTTTCATCATTAAAGGC
ATTGGCAGCAACAATCGATCATACTGATAAATTATTGGTTCCTGTGTTTGATGCAAGACGACAAGCAGTTTATACAGGCA
TATTCCAGTGGCAAAATGGTCAATTAGTGACTATTTTAGAAGATCAATATATGTCGATAGAGGCATTGCGAGCTTTTTTA
GAAGATTTAAACCAACCATTTATTTATATTGGGAAAGATACTATAAAATTACAAGATGAATTACAAGGTGAAGTGATTGC
GCAGCTACCAAATGCATCAGTCATGTATCAATTGATAGATAAACCTACAGACGTACATACATTTACTCCTAAATACCATA
AATTAGCTGAGGCGGAACGAAATTGGATCAACAGTCAAAAGAACAATTAA

Upstream 100 bases:

>100_bases
TTTATAAAAGATTTACTTCCAGCGACGCATTTATCTATTAACATTTCAACAATATCTGAAAATACAAGACAAATTGAGTT
GTTCGCGCAAGGAGAACATT

Downstream 100 bases:

>100_bases
ACATTAGAGAGATGACTAAAGAAGATGTGCCACAAGTCTTTGATCTTGAGCGTCGGAGTTTCAATGACAGTTCTTGGACA
ATTGACGCATTTTATCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNKLRRQLSMNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSKIAKQQLDAIIVAEGPGSYTG
LRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLVPVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFL
EDLNQPFIYIGKDTIKLQDELQGEVIAQLPNASVMYQLIDKPTDVHTFTPKYHKLAEAERNWINSQKNN

Sequences:

>Translated_229_residues
MNKLRRQLSMNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSKIAKQQLDAIIVAEGPGSYTG
LRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLVPVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFL
EDLNQPFIYIGKDTIKLQDELQGEVIAQLPNASVMYQLIDKPTDVHTFTPKYHKLAEAERNWINSQKNN
>Mature_229_residues
MNKLRRQLSMNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSKIAKQQLDAIIVAEGPGSYTG
LRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLVPVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFL
EDLNQPFIYIGKDTIKLQDELQGEVIAQLPNASVMYQLIDKPTDVHTFTPKYHKLAEAERNWINSQKNN

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=129, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25692; Mature: 25692

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLRRQLSMNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSK
CCHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEEHHHHHHHHHHHH
IAKQQLDAIIVAEGPGSYTGLRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLV
HHHHHCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCEEE
PVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFLEDLNQPFIYIGKDTIKLQDE
EEHHHHHHHHEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCEEEEHHH
LQGEVIAQLPNASVMYQLIDKPTDVHTFTPKYHKLAEAERNWINSQKNN
HCCHHHHHCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNKLRRQLSMNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSK
CCHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEEHHHHHHHHHHHH
IAKQQLDAIIVAEGPGSYTGLRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLV
HHHHHCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCEEE
PVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFLEDLNQPFIYIGKDTIKLQDE
EEHHHHHHHHEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCEEEEHHH
LQGEVIAQLPNASVMYQLIDKPTDVHTFTPKYHKLAEAERNWINSQKNN
HCCHHHHHCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]