Click here to switch to the map view.

The map label for this gene is clpP [H]

Identifier: 156980281

GI number: 156980281

Start: 2106077

End: 2106814

Strand: Reverse

Name: clpP [H]

Synonym: SAHV_1950

Alternate gene names: 156980281

Gene position: 2106814-2106077 (Counterclockwise)

Preceding gene: 156980282

Following gene: 156980280

Centisome position: 73.15

GC content: 36.45

Gene sequence:

>738_bases
ATGAAAGCGGAGATTAAAGGCGTCATCGTTTCCAACGAAGATAAATGGGTTTACGAAATGCTTGGTATGGATTCGACTTG
TCCTAAAGATGTTTTAACACAACTAGAATTTAGTGATGAAGATGTTGATATTATAATTAACTCAAATGGTGGTAACCTAG
TAGCTGGTAGTGAAATATATACACATTTAAGAGCTCATAAAGGCAAAGTGAATGTTCGCATCACAGCAATAGCAGCAAGT
GCGGCATCGCTTATCGCAATGGCTGGTGACCACATCGAAATGAGTCCGGTTGCTAGAATGATGATTCACAATCCTTCAAG
TATTGCGCAAGGAGAAGCGAAAGATCTAAATCATGCTGCAGAAACATTAGAACATGTTGGTCAAATAATGGCTGAGGCAT
ATGCGGTTAGAGCTGGTAAAAACAAACAAGAACTTGTAGAAATGATGGCTAGGGAAACGTGGCTAAATGCTGATGAAGCC
ATTGAACAAGGTTTTGCGGATAGTAAAATGTTTGAAAACGACAATATGCAAATTGTAGCAAGCAATACACAAGTGTTATC
GAAAGATGTATTAAATCGTGTAACAGCTTTGGTAAGTAAAACGCCAGAGGTTAACATTGATATTGACGCAATAGCAAATA
AAGTAATTGAAAAAATAAATATGAAAGAAAAGGAATCAGAAATCGATGTTGCAGATAGTAAAGTATCAGCAAATGGATTT
TCAAGATTCCTTTTTTAA

Upstream 100 bases:

>100_bases
TTAGACGAATACCTGATTACTAAAAACTACGAAAAAGCTAACAGTGGTGAAAATGATGAAAAAGAAAAAGATGAAAACAC
TTTGAAAGGTGGTGATGAAG

Downstream 100 bases:

>100_bases
TACAAAAAATAGGAGGTCATAAAATGACTATAAATTTATCGGAAACATTCGCAAATGCGAAAAACGAATTTATTAATGCA
GTAAACAACGGTGAACCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Endopeptidase Clp [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAAS
AASLIAMAGDHIEMSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEA
IEQGFADSKMFENDNMQIVASNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEKINMKEKESEIDVADSKVSANGF
SRFLF

Sequences:

>Translated_245_residues
MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAAS
AASLIAMAGDHIEMSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEA
IEQGFADSKMFENDNMQIVASNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEKINMKEKESEIDVADSKVSANGF
SRFLF
>Mature_245_residues
MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIYTHLRAHKGKVNVRITAIAAS
AASLIAMAGDHIEMSPVARMMIHNPSSIAQGEAKDLNHAAETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEA
IEQGFADSKMFENDNMQIVASNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEKINMKEKESEIDVADSKVSANGF
SRFLF

Specific function: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins [H]

COG id: COG0740

COG function: function code OU; Protease subunit of ATP-dependent Clp proteases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S14 family [H]

Homologues:

Organism=Escherichia coli, GI1786641, Length=141, Percent_Identity=32.6241134751773, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538017, Length=171, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001907
- InterPro:   IPR018215 [H]

Pfam domain/function: PF00574 CLP_protease [H]

EC number: =3.4.21.92 [H]

Molecular weight: Translated: 26840; Mature: 26840

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIY
CCCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECHHHH
THLRAHKGKVNVRITAIAASAASLIAMAGDHIEMSPVARMMIHNPSSIAQGEAKDLNHAA
HHHHHCCCEEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
ETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEAIEQGFADSKMFENDNMQIVA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCEEEEE
SNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEKINMKEKESEIDVADSKVSANGF
CCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCH
SRFLF
HHHCC
>Mature Secondary Structure
MKAEIKGVIVSNEDKWVYEMLGMDSTCPKDVLTQLEFSDEDVDIIINSNGGNLVAGSEIY
CCCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECHHHH
THLRAHKGKVNVRITAIAASAASLIAMAGDHIEMSPVARMMIHNPSSIAQGEAKDLNHAA
HHHHHCCCEEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
ETLEHVGQIMAEAYAVRAGKNKQELVEMMARETWLNADEAIEQGFADSKMFENDNMQIVA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCEEEEE
SNTQVLSKDVLNRVTALVSKTPEVNIDIDAIANKVIEKINMKEKESEIDVADSKVSANGF
CCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCH
SRFLF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA