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The map label for this gene is 156937941

Identifier: 156937941

GI number: 156937941

Start: 1030724

End: 1031215

Strand: Direct

Name: 156937941

Synonym: Igni_1153

Alternate gene names: NA

Gene position: 1030724-1031215 (Clockwise)

Preceding gene: 156937937

Following gene: 156937944

Centisome position: 79.44

GC content: 60.57

Gene sequence:

>492_bases
GTGAGCGGCGGCAAGTCTCGCCGACTCGAGCTCTACTTCGACGGCCTCTGCGAGCCAGTGAACCCCGGAGGGGTGGCCAC
CTACGGCTTCGTGGTTAAGGAGGGAGGGAAGGTCCTTTGCTCCGGCAAGGGCTTGGTTGGAGTGGGCGCCAGGGGCGACG
ACGTTACCAACAACGTAGCGGAGTACACGGCCTTGATAAAGGCGTTGGAGTGTTTGCTCGAGAAGGGCTTGGAGGGGGCT
GAGGTGGTAGTAAAGGGGGACTCCCAGCTGGCGATAAGGCAGCTGAGGGGCGAGTACAAGGTGAGGTCCCCGAGGATAGC
GCCGCTCTACAAGAGGGCCAAGGAGCTCTTGTCCAAGTTTAAGGCGGAGCTCCAGTGGGTTCCGAGGGAGCTCAACGAGG
AGGCAGATGCCTTGAGCAGGGAGGCCTTTAGGGAGTACTTGGAGGCCAACAAGGAGGAGTTCGAGAGGTACTACCTCAAG
TCCTCTCGATGA

Upstream 100 bases:

>100_bases
GTCCAGGCTAGACGACCGCCGCAGCCTCCGGAACGCGTTCCTTATTTCCGGTTAAAAGCGTTTCTGGAGGGGGATGAGGA
AGGACGAGGGTGAGCAAGGG

Downstream 100 bases:

>100_bases
CGGTGACGCACCTTTCGTCCTCCTTCACCACGGCCTTCATCCTACCCCCGTTGGACACTAGCTTGGGCCTCCACTCCCTC
CCGTCCATGAGGGTCAGCGC

Product: ribonuclease H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVAEYTALIKALECLLEKGLEGA
EVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKFKAELQWVPRELNEEADALSREAFREYLEANKEEFERYYLK
SSR

Sequences:

>Translated_163_residues
MSGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVAEYTALIKALECLLEKGLEGA
EVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKFKAELQWVPRELNEEADALSREAFREYLEANKEEFERYYLK
SSR
>Mature_162_residues
SGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVAEYTALIKALECLLEKGLEGAE
VVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKFKAELQWVPRELNEEADALSREAFREYLEANKEEFERYYLKS
SR

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 18152; Mature: 18021

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVA
CCCCCCCEEEEEECCCCCCCCCCCEEHHHEEEECCCEEEECCCCEEEECCCCCCHHHHHH
EYTALIKALECLLEKGLEGAEVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKF
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KAELQWVPRELNEEADALSREAFREYLEANKEEFERYYLKSSR
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SGGKSRRLELYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVA
CCCCCCEEEEEECCCCCCCCCCCEEHHHEEEECCCEEEECCCCEEEECCCCCCHHHHHH
EYTALIKALECLLEKGLEGAEVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKF
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KAELQWVPRELNEEADALSREAFREYLEANKEEFERYYLKSSR
HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]