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The map label for this gene is 156937208

Identifier: 156937208

GI number: 156937208

Start: 366858

End: 367925

Strand: Reverse

Name: 156937208

Synonym: Igni_0414

Alternate gene names: NA

Gene position: 367925-366858 (Counterclockwise)

Preceding gene: 156937209

Following gene: 156937206

Centisome position: 28.36

GC content: 58.99

Gene sequence:

>1068_bases
ATGGGAAGGAGGCGTAGGAGGTTCTGCGTCAAGTGCGGGGCGCTGGAGGCCCCCGACAACCCGATAGTGGACGGCTTGTG
CTTGAAGTGTCTAACGGAGGAAAGACCCCTCTTCGAGGTTAAGAGCAAGAGGAAGTTGGTGGTGTGCCCCGTGTGCTCCT
CCTACCTAGTGGACAACTCTTGGGTCAAGGGCACGGGGGACGTGGAGGAGACCATTAGGATGTTAGCCCACAGGATGGTG
GAGGAGGGCCTGAGGCCCGTCCCCCCGGCGGAGGGGGCGGAGCTCCTCTCCGTAGAGGTGGTTAGGAGGAGGGGCGGGAA
GTATTTCGCCGAAGTCACTGCGGAGGTAATCGTCAAGGGGGCTAAGACTGTTCAGACCTTGACCGTCCCGCTGGATGTAG
AGAAGAAGCCGTGTCCCAAGTGCTTGATGAAGAGCGGGAAGGACTACGACGCGGTCTTGCAGATACGCTCCGAGTCCGGC
AGGGTTACGCTAGAAGAGCTGAGGACCGCCGGGGAGCTCTTCGCTAAGGCTGGGAGCGGGGAGGACGTGGTGGAGTTAGT
GGACCAGAAGAACGGCTTGGACGTGTTATTGGTGAGTAAAGAGGTCGCCAAGAGAGCCGCGCAGCTGATGAGGTTCAACA
TGGGGGCCAAGATAATAGAGAGCTATAGTGTCGTGGGAATGAGGAAGGACGGGAAGGTGAGGACGAGGCTGACGATAAGC
GTAAGGCTCCCCAAGCTGAAGGGCGGCGAGGGCTTGCTCTTCTTCGGCGAACCGGCCATATTCGAGGGGTTCAACAAGGG
GAAGTTCTCCTTGTATTTGCTCCACAGCGACAAGGAGCTCAAGCTTCCCACGGACGAGTGGTGGCAACTGAGGAAGAGCG
GGAAGATAAAGTACTTGGACGAGGTGTACTTGAAGGTGGGCACGGTTGAGAGCGAGAACCCCTTGAAGGTGAACGTCGGG
GGCGAGGTGGTGGAGGCGGAGGGCCCGCCGGACTTGGAGCTGGGGGAGGAGGTTTACGTAATAGAGTACAAGGGGAAGGT
TTATGCCTTGCCCAAGGAGCCCCGATGA

Upstream 100 bases:

>100_bases
GCTACCCACGCGGTCAAGCCCTCTGTGGAGGAGTGGCTGACGTGCTTTCCTTATAAAGGATGAACTTGTGGGAAGTCGGA
CGGGCGCGGGAATGGGAAGA

Downstream 100 bases:

>100_bases
AGACCAGTTCCGCGCCCGAGAGGTGAGGAGCGAAAGGCCAGTCGGAGGGCCTCTCACTCTATCCCGGCCAGCCTCGCCAG
CTCCTCCACCAGCCCTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MGRRRRRFCVKCGALEAPDNPIVDGLCLKCLTEERPLFEVKSKRKLVVCPVCSSYLVDNSWVKGTGDVEETIRMLAHRMV
EEGLRPVPPAEGAELLSVEVVRRRGGKYFAEVTAEVIVKGAKTVQTLTVPLDVEKKPCPKCLMKSGKDYDAVLQIRSESG
RVTLEELRTAGELFAKAGSGEDVVELVDQKNGLDVLLVSKEVAKRAAQLMRFNMGAKIIESYSVVGMRKDGKVRTRLTIS
VRLPKLKGGEGLLFFGEPAIFEGFNKGKFSLYLLHSDKELKLPTDEWWQLRKSGKIKYLDEVYLKVGTVESENPLKVNVG
GEVVEAEGPPDLELGEEVYVIEYKGKVYALPKEPR

Sequences:

>Translated_355_residues
MGRRRRRFCVKCGALEAPDNPIVDGLCLKCLTEERPLFEVKSKRKLVVCPVCSSYLVDNSWVKGTGDVEETIRMLAHRMV
EEGLRPVPPAEGAELLSVEVVRRRGGKYFAEVTAEVIVKGAKTVQTLTVPLDVEKKPCPKCLMKSGKDYDAVLQIRSESG
RVTLEELRTAGELFAKAGSGEDVVELVDQKNGLDVLLVSKEVAKRAAQLMRFNMGAKIIESYSVVGMRKDGKVRTRLTIS
VRLPKLKGGEGLLFFGEPAIFEGFNKGKFSLYLLHSDKELKLPTDEWWQLRKSGKIKYLDEVYLKVGTVESENPLKVNVG
GEVVEAEGPPDLELGEEVYVIEYKGKVYALPKEPR
>Mature_354_residues
GRRRRRFCVKCGALEAPDNPIVDGLCLKCLTEERPLFEVKSKRKLVVCPVCSSYLVDNSWVKGTGDVEETIRMLAHRMVE
EGLRPVPPAEGAELLSVEVVRRRGGKYFAEVTAEVIVKGAKTVQTLTVPLDVEKKPCPKCLMKSGKDYDAVLQIRSESGR
VTLEELRTAGELFAKAGSGEDVVELVDQKNGLDVLLVSKEVAKRAAQLMRFNMGAKIIESYSVVGMRKDGKVRTRLTISV
RLPKLKGGEGLLFFGEPAIFEGFNKGKFSLYLLHSDKELKLPTDEWWQLRKSGKIKYLDEVYLKVGTVESENPLKVNVGG
EVVEAEGPPDLELGEEVYVIEYKGKVYALPKEPR

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007064 [H]

Pfam domain/function: PF04981 NMD3 [H]

EC number: NA

Molecular weight: Translated: 39546; Mature: 39414

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRRRRFCVKCGALEAPDNPIVDGLCLKCLTEERPLFEVKSKRKLVVCPVCSSYLVDNS
CCCCHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCEEEEEECCHHHHCCCC
WVKGTGDVEETIRMLAHRMVEEGLRPVPPAEGAELLSVEVVRRRGGKYFAEVTAEVIVKG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
AKTVQTLTVPLDVEKKPCPKCLMKSGKDYDAVLQIRSESGRVTLEELRTAGELFAKAGSG
CCEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCC
EDVVELVDQKNGLDVLLVSKEVAKRAAQLMRFNMGAKIIESYSVVGMRKDGKVRTRLTIS
HHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCEEEEEEEE
VRLPKLKGGEGLLFFGEPAIFEGFNKGKFSLYLLHSDKELKLPTDEWWQLRKSGKIKYLD
EEECCCCCCCEEEEECCCHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEE
EVYLKVGTVESENPLKVNVGGEVVEAEGPPDLELGEEVYVIEYKGKVYALPKEPR
EEEEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEECCEEEECCCCCC
>Mature Secondary Structure 
GRRRRRFCVKCGALEAPDNPIVDGLCLKCLTEERPLFEVKSKRKLVVCPVCSSYLVDNS
CCCHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCEEEEEECCHHHHCCCC
WVKGTGDVEETIRMLAHRMVEEGLRPVPPAEGAELLSVEVVRRRGGKYFAEVTAEVIVKG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
AKTVQTLTVPLDVEKKPCPKCLMKSGKDYDAVLQIRSESGRVTLEELRTAGELFAKAGSG
CCEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHCCCCC
EDVVELVDQKNGLDVLLVSKEVAKRAAQLMRFNMGAKIIESYSVVGMRKDGKVRTRLTIS
HHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCCCEEEEEEEE
VRLPKLKGGEGLLFFGEPAIFEGFNKGKFSLYLLHSDKELKLPTDEWWQLRKSGKIKYLD
EEECCCCCCCEEEEECCCHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEE
EVYLKVGTVESENPLKVNVGGEVVEAEGPPDLELGEEVYVIEYKGKVYALPKEPR
EEEEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEECCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]