Click here to switch to the map view.

The map label for this gene is 156937035

Identifier: 156937035

GI number: 156937035

Start: 208429

End: 208863

Strand: Reverse

Name: 156937035

Synonym: Igni_0240

Alternate gene names: NA

Gene position: 208863-208429 (Counterclockwise)

Preceding gene: 156937036

Following gene: 156937033

Centisome position: 16.1

GC content: 52.41

Gene sequence:

>435_bases
ATGATAGAGAGGGTAGAAGTAACCGTTATAATACACGCGACCGAAGACCCCGAAAAGGTCATGGAATCCGTATTCAACTT
GTTGGGTCTTAATAAAGAGGACGTGGACGAGGTCGAGACGCTTAGGTCGAGGGGGCACCACGGCAACCCCATTACGTACG
TAAAGATGGTGATTAAGGGCAAGAAGGCACAAAAGGCGCTTAGGAACATAATTAGTAGGATGGACGAGCTCGAGTATCAG
ATACTGAAGCGTGAGATGGACTTGAGGACCGAGGGGAGCAAGCTTTACTTGAGGTTTGACAAACAGAGGGCCTACTTGAA
CGAGGTATCGTTGAGCACGGGCTCTGACGTGGTGCGCGTGGTCGCCGTGTTCAAGGGCAGGGTGGACGAAGGGGCGTTGG
AGAAGTTTAGGAGGGCTGACAGCGCCGGGAGATAG

Upstream 100 bases:

>100_bases
GCAAGCTAGAGGCCTCTAAGGGGAAGGCAATTTACCCTAAGGGCTTGGAGGGCGAGATAGGCCCTATAGGCGCCGCGGCC
TTAATTTTGGCGGGCTTGAA

Downstream 100 bases:

>100_bases
CGGACCTCAGCGCCTCCCTCTCCTTCTTGCTCAGAAACACCTCCACGTCCCACTTCGTCTGCGGCTCGAGGGACGTGGAG
GCGTGGGAGACGTAGAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MIERVEVTVIIHATEDPEKVMESVFNLLGLNKEDVDEVETLRSRGHHGNPITYVKMVIKGKKAQKALRNIISRMDELEYQ
ILKREMDLRTEGSKLYLRFDKQRAYLNEVSLSTGSDVVRVVAVFKGRVDEGALEKFRRADSAGR

Sequences:

>Translated_144_residues
MIERVEVTVIIHATEDPEKVMESVFNLLGLNKEDVDEVETLRSRGHHGNPITYVKMVIKGKKAQKALRNIISRMDELEYQ
ILKREMDLRTEGSKLYLRFDKQRAYLNEVSLSTGSDVVRVVAVFKGRVDEGALEKFRRADSAGR
>Mature_144_residues
MIERVEVTVIIHATEDPEKVMESVFNLLGLNKEDVDEVETLRSRGHHGNPITYVKMVIKGKKAQKALRNIISRMDELEYQ
ILKREMDLRTEGSKLYLRFDKQRAYLNEVSLSTGSDVVRVVAVFKGRVDEGALEKFRRADSAGR

Specific function: Unknown

COG id: COG1325

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022803
- InterPro:   IPR002739 [H]

Pfam domain/function: PF01877 DUF54 [H]

EC number: NA

Molecular weight: Translated: 16521; Mature: 16521

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERVEVTVIIHATEDPEKVMESVFNLLGLNKEDVDEVETLRSRGHHGNPITYVKMVIKG
CCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCC
KKAQKALRNIISRMDELEYQILKREMDLRTEGSKLYLRFDKQRAYLNEVSLSTGSDVVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHH
VAVFKGRVDEGALEKFRRADSAGR
HHHHHCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIERVEVTVIIHATEDPEKVMESVFNLLGLNKEDVDEVETLRSRGHHGNPITYVKMVIKG
CCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCC
KKAQKALRNIISRMDELEYQILKREMDLRTEGSKLYLRFDKQRAYLNEVSLSTGSDVVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHH
VAVFKGRVDEGALEKFRRADSAGR
HHHHHCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]