Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
---|---|
Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is ybaF [H]
Identifier: 15675926
GI number: 15675926
Start: 1825576
End: 1826376
Strand: Reverse
Name: ybaF [H]
Synonym: SPy_2193
Alternate gene names: 15675926
Gene position: 1826376-1825576 (Counterclockwise)
Preceding gene: 15675927
Following gene: 15675925
Centisome position: 98.59
GC content: 34.21
Gene sequence:
>801_bases ATGGATAAGCTGATTCTTGGTCGTTATATTCCCGGAGATTCTCTCATTCATCGTCTTGACCCAAGAAGTAAATTATTAGC GATGATTATTTATATTGTCATTATCTTTTGGGCTAACAATGTTGTGACAAATTTGTTGATGTTGACTTTTACTTTAGCAG TTGTTTTTTTGTCAAAAATCAAGTTGTCTTTCTTTTTAAATGGGGTTAAACCAATGATTGGTATTATCCTCTTCACGACT TTATTTCAGATGTTTTTCTCACAAGGAGGAAAAGTAATTTTTAGTTGGTGGTTCATTAGCATAACTGATTTAGGATTGAG CCAAGCTATTTTAATTTTTATGCGTTTCGTTCTAATTATTTTCTTTTCAACGCTGTTAACGTTGACGACAACACCTTTAA GCCTATCTGATGCAGTTGAATCATTATTAAAACCTTTAACAAGATTTAAAGTTCCAGCTCACGAGATCGGACTAATGCTT TCTTTAAGTTTACGTTTTGTGCCTACTTTAATGGATGATACCACGCGTATTATGAATGCACAAAGGGCCCGTGGAGTTGA TTTTGGAGAGGGAAATTTAATTCAAAAAGTTAAATCCATTATTCCTATTTTAATCCCTCTTTTCGCTTCAAGCTTTAAAA GAGCCGACGCATTAGCTATTGCTATGGAAGCTAGAGGTTATCAGGGAGGAGAAGGGCGAACTAAATATCGTCAATTAGAC TGGCAGCTAAAAGATAGTTTAGCTATTGGAATAGTTTCTTTATTGGGTTTGCTACTTTTTTTCTTGAAAACCTCTTTGTA A
Upstream 100 bases:
>100_bases GTTCCTAAGGTGACTAAACTTGCTCAAAGGCTTGTTGATAGAGGAATACCTATCTCTTCTTTGCCTATTACCTTAGAGGA GCTAAGAGAGGTACTAAAAC
Downstream 100 bases:
>100_bases TATTTTTTAGCACAAAACTTTTCTTTATTAGTAAGAAGTGAATTGTACCTCAAAAGTTAGATACAATATCTAATGATTGA GGTACTTTTCTTCATTTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MDKLILGRYIPGDSLIHRLDPRSKLLAMIIYIVIIFWANNVVTNLLMLTFTLAVVFLSKIKLSFFLNGVKPMIGIILFTT LFQMFFSQGGKVIFSWWFISITDLGLSQAILIFMRFVLIIFFSTLLTLTTTPLSLSDAVESLLKPLTRFKVPAHEIGLML SLSLRFVPTLMDDTTRIMNAQRARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALAIAMEARGYQGGEGRTKYRQLD WQLKDSLAIGIVSLLGLLLFFLKTSL
Sequences:
>Translated_266_residues MDKLILGRYIPGDSLIHRLDPRSKLLAMIIYIVIIFWANNVVTNLLMLTFTLAVVFLSKIKLSFFLNGVKPMIGIILFTT LFQMFFSQGGKVIFSWWFISITDLGLSQAILIFMRFVLIIFFSTLLTLTTTPLSLSDAVESLLKPLTRFKVPAHEIGLML SLSLRFVPTLMDDTTRIMNAQRARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALAIAMEARGYQGGEGRTKYRQLD WQLKDSLAIGIVSLLGLLLFFLKTSL >Mature_266_residues MDKLILGRYIPGDSLIHRLDPRSKLLAMIIYIVIIFWANNVVTNLLMLTFTLAVVFLSKIKLSFFLNGVKPMIGIILFTT LFQMFFSQGGKVIFSWWFISITDLGLSQAILIFMRFVLIIFFSTLLTLTTTPLSLSDAVESLLKPLTRFKVPAHEIGLML SLSLRFVPTLMDDTTRIMNAQRARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALAIAMEARGYQGGEGRTKYRQLD WQLKDSLAIGIVSLLGLLLFFLKTSL
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiQ family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003339 [H]
Pfam domain/function: PF02361 CbiQ [H]
EC number: NA
Molecular weight: Translated: 29932; Mature: 29932
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLILGRYIPGDSLIHRLDPRSKLLAMIIYIVIIFWANNVVTNLLMLTFTLAVVFLSKI CCCCEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSFFLNGVKPMIGIILFTTLFQMFFSQGGKVIFSWWFISITDLGLSQAILIFMRFVLII HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHH FFSTLLTLTTTPLSLSDAVESLLKPLTRFKVPAHEIGLMLSLSLRFVPTLMDDTTRIMNA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALAIAMEARGYQGGEGRTKYRQLD HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH WQLKDSLAIGIVSLLGLLLFFLKTSL HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDKLILGRYIPGDSLIHRLDPRSKLLAMIIYIVIIFWANNVVTNLLMLTFTLAVVFLSKI CCCCEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSFFLNGVKPMIGIILFTTLFQMFFSQGGKVIFSWWFISITDLGLSQAILIFMRFVLII HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHH FFSTLLTLTTTPLSLSDAVESLLKPLTRFKVPAHEIGLMLSLSLRFVPTLMDDTTRIMNA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALAIAMEARGYQGGEGRTKYRQLD HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH WQLKDSLAIGIVSLLGLLLFFLKTSL HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]