Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is holB [H]
Identifier: 15675917
GI number: 15675917
Start: 1814174
End: 1815541
Strand: Reverse
Name: holB [H]
Synonym: SPy_2182
Alternate gene names: 15675917
Gene position: 1815541-1814174 (Counterclockwise)
Preceding gene: 15675918
Following gene: 15675916
Centisome position: 98.01
GC content: 39.04
Gene sequence:
>1368_bases ATGAGGTTGCCTGAAGTAGCTGAATTACGAGTTCAACCCCAAGATTTACTAGCAGAGCAATCTGTTCTTGGGTCAATCTT TATCTCACCTGATAAGCTGATTGCAGTGAGAGAATTTATCAGTCCAGACGATTTTTATAAGTACGCTCATAAAATTATCT TTCGGGCAATGATTACCCTCAGCGATCGTAATGATGCCATTGATGCAACCACTATAAGAACAATCCTAGATGATCAAGAT GATCTGCAAAGTATTGGTGGCTTATCCTATATTGTTGAACTAGTTAATAGTGTCCCAACTAGTGCTAATGCAGAATATTA TGCTAAAATTGTAGCTGAGAAAGCTATGTTGCGTGATATTATTGCTAGGTTGACAGAATCTGTCAACCTAGCTTATGATG AAATTTTAAAACCAGAAGAGGTTATCGCTGGAGTTGAGAGAGCTTTAATTGAACTCAATGAACATAGTAATCGTAGTGGG TTTCGCAAAATTTCAGATGTGCTAAAAGTTAATTACGAGGCTTTAGAAGCACGTTCTAAGCAGACTTCAAATGTTACAGG TTTACCAACTGGTTTTAGAGACCTTGACAAGATTACAACAGGTTTACACCCAGATCAATTAGTTATTTTAGCTGCTCGGC CAGCAGTGGGGAAGACTGCCTTTGTTCTTAATATTGCGCAAAATGTGGGGACTAAGCAAAAAAAGACTGTTGCTATTTTT TCTTTGGAAATGGGTGCTGAAAGTTTAGTAGATCGTATGCTTGCAGCAGAAGGAATGGTTGATTCGCACAGTTTAAGAAC AGGGCAACTCACAGATCAGGATTGGAATAATGTAACAATTGCTCAGGGAGCTTTGGCAGAAGCACCGATTTATATTGACG ATACGCCCGGGATTAAAATTACTGAAATCCGCGCAAGATCACGGAAATTGTCTCAAGAAGTGGATGGTGGTTTAGGTCTC ATTGTAATTGACTACTTACAGTTGATTACAGGAACTAAACCCGAAAATCGTCAGCAAGAGGTTTCAGATATTTCAAGACA GCTTAAAATCCTAGCTAAAGAATTGAAAGTACCAGTTATTGCCCTAAGTCAGCTTTCTCGTGGCGTTGAGCAAAGGCAAG ATAAACGACCAGTTTTATCAGATATTCGTGAATCAGGATCTATTGAGCAGGATGCCGATATTGTAGCCTTCTTATACCGG GACGATTATTACCGTAAAGAATGTGATGATGCTGAAGAAGCTGTTGAAGATAACACAATTGAAGTTATCCTCGAGAAAAA TAGAGCTGGGGCGCGTGGAACAGTCAAACTGATGTTCCAAAAAGAATACAACAAATTCTCAAGTATAGCCCAGTTTGAAG AAAGATAA
Upstream 100 bases:
>100_bases TAATTGAAGTTCCTGTGAAATTACATAAGGAAGTAACAGCTGAGATTAAATTGGCTATCACAGAAGCATAATATAAAAAA CATCACAAGATTTGGAGGTT
Downstream 100 bases:
>100_bases GAAAGAGAGACAAAAAATGAGCGATGCATTTACAGATGTTGCAAAAATGAAAAAAATTAAAGAGGACATAAGAGCCCATG AAGGACAGTTAGTAGAATTA
Product: replicative DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITLSDRNDAIDATTIRTILDDQD DLQSIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDIIARLTESVNLAYDEILKPEEVIAGVERALIELNEHSNRSG FRKISDVLKVNYEALEARSKQTSNVTGLPTGFRDLDKITTGLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF SLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDGGLGL IVIDYLQLITGTKPENRQQEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR DDYYRKECDDAEEAVEDNTIEVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEER
Sequences:
>Translated_455_residues MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITLSDRNDAIDATTIRTILDDQD DLQSIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDIIARLTESVNLAYDEILKPEEVIAGVERALIELNEHSNRSG FRKISDVLKVNYEALEARSKQTSNVTGLPTGFRDLDKITTGLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF SLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDGGLGL IVIDYLQLITGTKPENRQQEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR DDYYRKECDDAEEAVEDNTIEVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEER >Mature_455_residues MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITLSDRNDAIDATTIRTILDDQD DLQSIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDIIARLTESVNLAYDEILKPEEVIAGVERALIELNEHSNRSG FRKISDVLKVNYEALEARSKQTSNVTGLPTGFRDLDKITTGLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF SLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDGGLGL IVIDYLQLITGTKPENRQQEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR DDYYRKECDDAEEAVEDNTIEVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEER
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=455, Percent_Identity=42.8571428571429, Blast_Score=343, Evalue=1e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 50785; Mature: 50785
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITL CCCCCCHHHCCCHHHHHHHHHHHHHEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC SDRNDAIDATTIRTILDDQDDLQSIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDI CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH IARLTESVNLAYDEILKPEEVIAGVERALIELNEHSNRSGFRKISDVLKVNYEALEARSK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC QTSNVTGLPTGFRDLDKITTGLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHEEEEHHHCCCCCCCEEEEE SLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKI EECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCEEE TEIRARSRKLSQEVDGGLGLIVIDYLQLITGTKPENRQQEVSDISRQLKILAKELKVPVI EHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH ALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRKECDDAEEAVEDNTI HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHCCCCE EVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEER EEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHCC >Mature Secondary Structure MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAHKIIFRAMITL CCCCCCHHHCCCHHHHHHHHHHHHHEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC SDRNDAIDATTIRTILDDQDDLQSIGGLSYIVELVNSVPTSANAEYYAKIVAEKAMLRDI CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH IARLTESVNLAYDEILKPEEVIAGVERALIELNEHSNRSGFRKISDVLKVNYEALEARSK HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC QTSNVTGLPTGFRDLDKITTGLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHEEEEHHHCCCCCCCEEEEE SLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKI EECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCEEE TEIRARSRKLSQEVDGGLGLIVIDYLQLITGTKPENRQQEVSDISRQLKILAKELKVPVI EHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH ALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRKECDDAEEAVEDNTI HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHCCCCE EVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEER EEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]