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The map label for this gene is yqgF [C]

Identifier: 15675863

GI number: 15675863

Start: 1764930

End: 1765349

Strand: Reverse

Name: yqgF [C]

Synonym: SPy_2113

Alternate gene names: 15675863

Gene position: 1765349-1764930 (Counterclockwise)

Preceding gene: 15675864

Following gene: 15675862

Centisome position: 95.3

GC content: 37.62

Gene sequence:

>420_bases
ATGAGAATAATGGGACTTGATGTTGGCTCGAAAACGGTTGGTGTAGCTATTAGTGATCCTCTTGGCTTTACAGCCCAAGG
ACTTGAAATTATCAAGATTGATGAGGAAAAAGCAGAATTTGGCTTTACACGTTTAGAAGAGCTTGTTAAGCAGTACCAAG
TTGAACAGTTTGTTATTGGATTGCCAAAAAATATGAATAACACCAATGGTCCACGTGTTGATGCAAGTATAACTTATGGA
AACCACATAGAGCACCTCTTTGGACTTCCAGTCCATTATCAAGATGAACGATTGACGACTGTTGAGGCAAAGCGTATGCT
TATTGAGCAAGCTGACATTAGTCGTGGTAAGCGAAAAAAAGTCATTGATAAATTAGCTGCACAACTCATTTTACAGAACT
ATTTAAATCGGAATTTTTAA

Upstream 100 bases:

>100_bases
GTTATAATGATGCTCGAAATCAGATTCGTAAATATGAACGTGATGAAATTGTAGAAGAACTTGTTCGCTACTATTTACAA
GGAAATGGAATTGATGTTAA

Downstream 100 bases:

>100_bases
GGAGATAAAAAATGACACATAATCATGAAAATGACCACCAACACGAAGTTATCACACTTGTGGATGAACAAGGAAATGAA
ACCTTGTTTGAAATTTTATT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKNMNNTNGPRVDASITYG
NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKKVIDKLAAQLILQNYLNRNF

Sequences:

>Translated_139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKNMNNTNGPRVDASITYG
NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKKVIDKLAAQLILQNYLNRNF
>Mature_139_residues
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPKNMNNTNGPRVDASITYG
NHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKKVIDKLAAQLILQNYLNRNF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=32.8467153284672, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_STRP1 (Q99XP4)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_270037.1
- RefSeq:   YP_283159.1
- ProteinModelPortal:   Q99XP4
- SMR:   Q99XP4
- EnsemblBacteria:   EBSTRT00000000340
- EnsemblBacteria:   EBSTRT00000027839
- GeneID:   3571083
- GeneID:   901750
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_2113
- KEGG:   spz:M5005_Spy_1796
- GeneTree:   EBGT00050000027465
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   SPYO160490:SPY2113-MONOMER
- BioCyc:   SPYO293653:M5005_SPY1796-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15759; Mature: 15759

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG
CEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK
CCCCCCCCCCCEEEEEEECCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCHHHH
VIDKLAAQLILQNYLNRNF
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG
CEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHEEE
LPKNMNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK
CCCCCCCCCCCEEEEEEECCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCHHHH
VIDKLAAQLILQNYLNRNF
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296