Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 15675788

GI number: 15675788

Start: 1668357

End: 1669334

Strand: Direct

Name: dppB [H]

Synonym: SPy_2001

Alternate gene names: 15675788

Gene position: 1668357-1669334 (Clockwise)

Preceding gene: 15675787

Following gene: 15675789

Centisome position: 90.06

GC content: 40.18

Gene sequence:

>978_bases
GTGAAACGTACTACCATTATTATCATCTGGAAAATCATCAGATGTGTCACGCTTATTTTTGGGGTATCTGTTTTGACCTT
CGTTTTGTTAAAACAATCTCCAGTAGATCCAGTCATGGCAAGTGTCAATTATGACACATCACTAACCCCTGCTCAGTACA
AAGCGATTGCTCACCACTATGGCTTGGATAAGCCAGCTCTAGTCCAATATTTTATTTGGTTGAAAAATGTGATACAGGGA
GATTTAGGGACCTCGCTCGTTTATCGGCAACCTGTTAGTGATATTATTAGATCACGGGCAGGTGCTTCTTTCATACTTAT
GGGACTCTCTTGGATCTTATCGGGTCTTATTGGATTTATCTTAGGAACGTTATCCGCTTTCCATCAAGGGAAATTACTTG
ACCGAGTTGTCAGGTGGTTTTCATACCTTCAGATATCAGTACCAACGTTTTGGATTGGACTCATTTTTTTATTAATCTTT
TCTGTCCAGCTGGGGTGGTTCCCGATTGGTATTTCTTCCCCGATAGGCACTTTGAGTCAAGATATTACGTTAGCTGATCG
AGTTAAGCACCTTATGTTACCTGTTTTCACGCTAAGTATTCTAGGCATTGCCAATGTCACCCTTCATACGAGAACTAAAA
TGATGTCGGTGCTTTCTAGTGAATATGTCTTATTTGCCAGAGCGCGTGGGGAAACACAGTGGCAAATTTTTAAACATCAT
TGCCTTAGAAATGCTATCGTACCAGCTATTACACTGCATTTTTCCTATTTTGGAGAATTGTTTGGAGGATCTGTTCTTGC
TGAGCAAGTTTTCTCATATCCTGGCTTAGGGTCTACCCTCACTGAAGCAGGACTTAAAAGTGATACACCGCTCCTTCTAG
CTATTGTGATGATAGGGACATTATTTGTTTTTGCGGGCAATCTTATTGCGGATATTTTAAATAGCATCATCAATCCACAG
TTAAGGAGAAAAGTATGA

Upstream 100 bases:

>100_bases
ATACAGCGACTTTAAGTTTGGAGTCTGAGAAAACAAGATACACAAAACTGTGCTGATCGTTTCCTCGGCTCCTTTTCTTA
TCGATTAAGGAGATTTCATT

Downstream 100 bases:

>100_bases
TATTGAAACGTCGAACGATGGTTTTATGGCAACTGGGTATCGCCATTTCTCTCATTCTTAGTATTCTAGCCTTAAACCTT
TATTTCTATAGGACGCCTTT

Product: transmembrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKRTTIIIIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPALVQYFIWLKNVIQG
DLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIF
SVQLGWFPIGISSPIGTLSQDITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHH
CLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFAGNLIADILNSIINPQ
LRRKV

Sequences:

>Translated_325_residues
MKRTTIIIIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPALVQYFIWLKNVIQG
DLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIF
SVQLGWFPIGISSPIGTLSQDITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHH
CLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFAGNLIADILNSIINPQ
LRRKV
>Mature_325_residues
MKRTTIIIIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPALVQYFIWLKNVIQG
DLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIF
SVQLGWFPIGISSPIGTLSQDITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHH
CLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGTLFVFAGNLIADILNSIINPQ
LRRKV

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=32.2884012539185, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1789965, Length=322, Percent_Identity=29.8136645962733, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789888, Length=319, Percent_Identity=28.5266457680251, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=26.1829652996845, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787761, Length=310, Percent_Identity=31.6129032258064, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=27.6119402985075, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=28.2142857142857, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36141; Mature: 36141

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTTIIIIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHY
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHC
GLDKPALVQYFIWLKNVIQGDLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFI
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHH
DITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
CLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGT
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
LFVFAGNLIADILNSIINPQLRRKV
HHHHHHHHHHHHHHHHHCHHHHHCC
>Mature Secondary Structure
MKRTTIIIIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHY
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHC
GLDKPALVQYFIWLKNVIQGDLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFI
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHH
DITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGETQWQIFKHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
CLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLLLAIVMIGT
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
LFVFAGNLIADILNSIINPQLRRKV
HHHHHHHHHHHHHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]