Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
---|---|
Accession | NC_002737 |
Length | 1,852,441 |
Click here to switch to the map view.
The map label for this gene is yhfR [C]
Identifier: 15675689
GI number: 15675689
Start: 1552049
End: 1552792
Strand: Direct
Name: yhfR [C]
Synonym: SPy_1870
Alternate gene names: 15675689
Gene position: 1552049-1552792 (Clockwise)
Preceding gene: 15675685
Following gene: 15675690
Centisome position: 83.78
GC content: 36.02
Gene sequence:
>744_bases ATGTCTACTAACGACTTAACCAAAAAACTCAAAAAACTTAAACATGTGCAAGTATATAATACTATTTTTCAACTTATTCA AGATGGTACATATAGTCCTGGCATGCAACTGCCATCAGAACCTGAACTTGCTAGACAGCTCAATGTCAGTCGGATGACAC TACGTAAATCCCTAGCCCTCCTCCAAGAGGATCATCTCATAAAAAATATCAGAGGAAAGGGAAATTTTATACTCAAGACT CCTGAAACTAAATATCACCAAGGTTTCGAATATCTTCAACACCCCATATATGCAAGCCTATCATCTGACATCACAAAGGT TGAGTTGGAATATCGGATTGAAGTGCCCACTGTTGCCATTACAGCATCCCTAAAACAAGAAACTCCTGTTGTGATTATTG TTGATCGCTGGTATCATAGCCAAAATAAAGCTATTGCTTATAGTTTATCTTTTATCCCTATTGAGGTTATTTCTAAATAT GCTATAAATCTCAATCAAGAAGAGCCCCTTCTTACTTTCTTAGAAGAGAAAATCTATGAATCTGGTAAAGCTTCTCATTC CTGCAACCAAATCGGCTATACCAAGACTGGCAATTACACAGCAACTAAGTATACTCTATCAGAAAATAGTGCTTTTATTT TAATCCAAGAAACTCTCTACAATGGTAAAGACATCTTGGTCTCAACCAAACACTACGTTCCTGCTGATTTATTTGACTTA AAAGTTCAATCTCAAAGTTGCTAA
Upstream 100 bases:
>100_bases ACTATAGATGGGTACAATTCTAATCAAGGAAATACTGTAGTGCTAAAATAGTTTTTAGACAAGTTAAACTCCACTAAAGA TTATTAATGAGGTAAGTGAT
Downstream 100 bases:
>100_bases AGCGACACTCATTAAACACCTTTAAACAGTTATTAATACCTGACTCCCACACTTAGATGTGGAGTTTTTTGATATTATGG CTAAAAAAGATAACTAGTTA
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulatory Protein; GntR Family Transcriptional Regulator; Transcription Regulator; Regulatory Protein GntR HTH
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MSTNDLTKKLKKLKHVQVYNTIFQLIQDGTYSPGMQLPSEPELARQLNVSRMTLRKSLALLQEDHLIKNIRGKGNFILKT PETKYHQGFEYLQHPIYASLSSDITKVELEYRIEVPTVAITASLKQETPVVIIVDRWYHSQNKAIAYSLSFIPIEVISKY AINLNQEEPLLTFLEEKIYESGKASHSCNQIGYTKTGNYTATKYTLSENSAFILIQETLYNGKDILVSTKHYVPADLFDL KVQSQSC
Sequences:
>Translated_247_residues MSTNDLTKKLKKLKHVQVYNTIFQLIQDGTYSPGMQLPSEPELARQLNVSRMTLRKSLALLQEDHLIKNIRGKGNFILKT PETKYHQGFEYLQHPIYASLSSDITKVELEYRIEVPTVAITASLKQETPVVIIVDRWYHSQNKAIAYSLSFIPIEVISKY AINLNQEEPLLTFLEEKIYESGKASHSCNQIGYTKTGNYTATKYTLSENSAFILIQETLYNGKDILVSTKHYVPADLFDL KVQSQSC >Mature_246_residues STNDLTKKLKKLKHVQVYNTIFQLIQDGTYSPGMQLPSEPELARQLNVSRMTLRKSLALLQEDHLIKNIRGKGNFILKTP ETKYHQGFEYLQHPIYASLSSDITKVELEYRIEVPTVAITASLKQETPVVIIVDRWYHSQNKAIAYSLSFIPIEVISKYA INLNQEEPLLTFLEEKIYESGKASHSCNQIGYTKTGNYTATKYTLSENSAFILIQETLYNGKDILVSTKHYVPADLFDLK VQSQSC
Specific function: Unknown
COG id: COG2188
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28199; Mature: 28067
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNDLTKKLKKLKHVQVYNTIFQLIQDGTYSPGMQLPSEPELARQLNVSRMTLRKSLAL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHH LQEDHLIKNIRGKGNFILKTPETKYHQGFEYLQHPIYASLSSDITKVELEYRIEVPTVAI HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCHHHHHHCCCCEEEEEEEEEECCEEEE TASLKQETPVVIIVDRWYHSQNKAIAYSLSFIPIEVISKYAINLNQEEPLLTFLEEKIYE EEECCCCCCEEEEEECEECCCCCEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHH SGKASHSCNQIGYTKTGNYTATKYTLSENSAFILIQETLYNGKDILVSTKHYVPADLFDL CCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEHHHCCCCEEEEECCCCCCCCCEEE KVQSQSC EECCCCC >Mature Secondary Structure STNDLTKKLKKLKHVQVYNTIFQLIQDGTYSPGMQLPSEPELARQLNVSRMTLRKSLAL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHH LQEDHLIKNIRGKGNFILKTPETKYHQGFEYLQHPIYASLSSDITKVELEYRIEVPTVAI HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCHHHHHHCCCCEEEEEEEEEECCEEEE TASLKQETPVVIIVDRWYHSQNKAIAYSLSFIPIEVISKYAINLNQEEPLLTFLEEKIYE EEECCCCCCEEEEEECEECCCCCEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHH SGKASHSCNQIGYTKTGNYTATKYTLSENSAFILIQETLYNGKDILVSTKHYVPADLFDL CCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEHHHCCCCEEEEECCCCCCCCCEEE KVQSQSC EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA