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The map label for this gene is udp [H]

Identifier: 15675688

GI number: 15675688

Start: 1551030

End: 1551809

Strand: Reverse

Name: udp [H]

Synonym: SPy_1869

Alternate gene names: 15675688

Gene position: 1551809-1551030 (Counterclockwise)

Preceding gene: 15675691

Following gene: 15675687

Centisome position: 83.77

GC content: 40.64

Gene sequence:

>780_bases
ATGCAAAATTATTCAGGTGAAGTCGGATTGCAATATCACCTACAGATTCGTCCAGGTGATGTAGGTCGTTATGTTATCAT
GCCAGGTGATCCAAAACGTTGTGCAAAAATTGCAGAACATTTTGATAATGCAGTTCTTGTAGCAGACAGCCGTGAATATG
TTACGTATACAGGTACATTAAACGGTGAAAAAGTTAGTGTTACTTCAACTGGTATTGGTGGTCCATCAGCGTCTATTGCG
ATGGAAGAATTGAAACTTTGTGGCGCTGATACCTTTATCCGTGTTGGAACATGTGGTGGTATTGACCTTGATGTTAAAGG
CGGAGACATCGTTATTGCAACTGGAGCTATCCGTATGGAAGGTACCAGTAAAGAATATGCTCCGATTGAATTTCCTGCTG
TAGCTGACTTGGAAGTGACAAATGCTCTAGTTAATGCAGCTAAAAAGCTTGGTTATACAAGTCACGCAGGAGTAGTTCAA
TGTAAAGATGCATTTTACGGGCAACATGAGCCAGAACGTATGCCAGTTAGTTATGAATTATTAAATAAATGGGAAGCATG
GAAACGTCTGGGAACAAAAGCGTCTGAAATGGAATCTGCAGCTCTTTTTGTAGCAGCAAGTCATCTAGGAGTTCGTTGTG
GATCAGATTTCCTTGTTGTTGGTAATCAAGAACGCAACGCTTTGGGTATGGATAACCCAATGGCTCATGATACAGAAGCA
GCTATTCAAGTTGCTGTTGAAGCACTCCGCACACTTATTGAAAATGATAAATCACAATAA

Upstream 100 bases:

>100_bases
GATGAAAAACACTTTAAAAAAGCGTTTACAAAATAGAGTGTGTGTGATACTATACAAGTGTATCAAAAATTAGACAAGTA
AAATACAGGAGGTTTTTAAC

Downstream 100 bases:

>100_bases
GCGAGGTTTTGGAAGTCATCATGCAATTTATTTATAGTATTATTGGTATTTTATTGGTATTAGGAATTGTGTATGCAATT
TCTTTCAATCGTAAGAGTGT

Product: putative uridine phosphorylase

Products: NA

Alternate protein names: UPase; UrdPase [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIA
MEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQ
CKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEA
AIQVAVEALRTLIENDKSQ

Sequences:

>Translated_259_residues
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIA
MEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQ
CKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEA
AIQVAVEALRTLIENDKSQ
>Mature_259_residues
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIA
MEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQ
CKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEA
AIQVAVEALRTLIENDKSQ

Specific function: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synth

COG id: COG2820

COG function: function code F; Uridine phosphorylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

Organism=Escherichia coli, GI1790265, Length=247, Percent_Identity=40.080971659919, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1790844, Length=203, Percent_Identity=34.9753694581281, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- InterPro:   IPR010058 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.3 [H]

Molecular weight: Translated: 27829; Mature: 27829

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTL
CCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEEEECC
NGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRME
CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCEEEEECEEEEC
GTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYEL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCHHHH
LNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEA
HHHHHHHHHHCCCHHHHHHHEEEEEEHHCCEEECCCEEEEECCCCCCCCCCCCCCCCHHH
AIQVAVEALRTLIENDKSQ
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTL
CCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEEEECC
NGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRME
CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCEEEEECEEEEC
GTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYEL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCHHHH
LNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEA
HHHHHHHHHHCCCHHHHHHHEEEEEEHHCCEEECCCEEEEECCCCCCCCCCCCCCCCHHH
AIQVAVEALRTLIENDKSQ
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]