Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 15675686

GI number: 15675686

Start: 1549106

End: 1549777

Strand: Reverse

Name: deoC [H]

Synonym: SPy_1867

Alternate gene names: 15675686

Gene position: 1549777-1549106 (Counterclockwise)

Preceding gene: 15675687

Following gene: 15675684

Centisome position: 83.66

GC content: 37.2

Gene sequence:

>672_bases
GTGGAAGTAAAAGATATTTTAAAAACGGTAGACCATACTTTGCTAGCAACAACAGCAACGTGGCCAGAAATCCAAACAAT
TTTAGATGATGCCATGGCTTATGAAACAGCTTCAGCATGTATTCCAGCTTCTTACGTCAAAAAAGCAGCAGAATACGTTT
CAGGTAAATTAGCTATTTGTACTGTTATTGGGTTCCCAAATGGCTATAGTACAACTGCGGCGAAGGTTTTTGAATGTCAA
GATGCTATTCAAAATGGTGCTGATGAAATTGACATGGTCATTAATTTGACAGACGTTAAAAATGGGGATTTTGATACTGT
TGAAGAAGAAATTCGTCAAATCAAAGCTAAATGTCAAGACCATATCTTAAAAGTTATCGTTGAGACATGTCAATTAACTA
AAGAAGAACTTATCGAACTTTGTGGAGTTGTCACACGTTCAGGTGCAGACTTTATTAAAACCTCTACTGGTTTTTCGACA
GCAGGTGCTACATTTGAAGATGTTGAAGTGATGGCAAAATATGTCGGCGAAGGTGTTAAAATTAAGGCAGCAGGTGGAAT
CTCATCATTGGAAGATGCTAAAACATTTATTGCTTTAGGAGCTTCACGCTTGGGTACTAGCCGTATCATCAAGATTGTTA
AGAACGAAGCTACAAAAACCGATAGCTATTAA

Upstream 100 bases:

>100_bases
GTGCAATGATTGGTGGTATTGCTGTAAGTATGCTTAGCGCCTTTATCGTCGGTATTGTAACTCTATTCTAAACGTTGACA
AAAGAAAGAAGGATAGTAAC

Downstream 100 bases:

>100_bases
CTTAATCATACCGATTTAGCTTGAGACTAAAACAAAAAACTCATATAATAGGAGTTAAAAAGCCTACTATCTTAGTGATA
ATAGGCTTTTTTAGCTATGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQ
DAIQNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAKCQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFST
AGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAKTFIALGASRLGTSRIIKIVKNEATKTDSY

Sequences:

>Translated_223_residues
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQ
DAIQNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAKCQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFST
AGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAKTFIALGASRLGTSRIIKIVKNEATKTDSY
>Mature_223_residues
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQ
DAIQNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAKCQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFST
AGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAKTFIALGASRLGTSRIIKIVKNEATKTDSY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=184, Percent_Identity=33.1521739130435, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790841, Length=184, Percent_Identity=32.0652173913043, Blast_Score=75, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17533015, Length=150, Percent_Identity=34.6666666666667, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19922098, Length=186, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24008; Mature: 24008

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAIC
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEE
TVIGFPNGYSTTAAKVFECQDAIQNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAKCQD
EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
HILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVK
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEE
IKAAGGISSLEDAKTFIALGASRLGTSRIIKIVKNEATKTDSY
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAIC
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEE
TVIGFPNGYSTTAAKVFECQDAIQNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAKCQD
EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
HILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVK
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEE
IKAAGGISSLEDAKTFIALGASRLGTSRIIKIVKNEATKTDSY
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA