Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is gatB [H]
Identifier: 15675614
GI number: 15675614
Start: 1464152
End: 1465591
Strand: Reverse
Name: gatB [H]
Synonym: SPy_1770
Alternate gene names: 15675614
Gene position: 1465591-1464152 (Counterclockwise)
Preceding gene: 15675615
Following gene: 15675613
Centisome position: 79.12
GC content: 43.33
Gene sequence:
>1440_bases ATGAATTTTGAAACCATTATTGGGCTTGAAGTCCATGTGGAATTAAATACCAATTCCAAAATTTTCTCACCTTCGTCAGC TCACTTTGGTGAGGACCCAAATGCCAACACGAATGTGATTGATTGGTCTTTCCCAGGGGTCTTACCAGTCATGAACAAAG GGGTGATTGATGCGGGCATAAAAGCAGCGCTTGCCCTTAATATGGACATCCATAAAGAGATGCACTTTGACCGCAAAAAT TATTTCTACCCAGATAATCCTAAAGCTTATCAAATTTCACAGTTTGATGAGCCGATTGGCTACAACGGCTGGATTGATAT CAAACTAGAAGACGGTTCAACCAAGAAAATTCGTATTGAACGCGCACACTTGGAAGAAGATGCTGGTAAAAACACTCATG GCACAGATGGTTATTCTTATGTGGACCTTAACCGCCAAGGAGTTCCTTTGATTGAGATTGTGTCAGAAGCCGACATGCGT TCTCCTGAAGAAGCCTATGCTTATTTGACAGCTCTGAAAGAAATCATCCAGTATACGGGTATTTCTGATGTCAAGATGGA AGAAGGCTCCATGCGTGTGGATGCCAATATTTCTCTTCGTCCTTACGGGCAAGAACAATTTGGAACAAAGACCGAATTGA AAAACTTGAACTCCTTCTCAAATGTCCGTAAAGGGCTTGAATTTGAGGTGGAACGTCAAGCCAAACTCTTGCGTTCAGGT GGTGTGATACGCCAAGAAACGCGCCGCTATGACGAAGCGAATAAGGGGACTATTTTGATGCGGGTCAAAGAAGGGGCAGC GGACTATCGTTATTTCCCAGAACCAGACCTGCCATTATATGAGATTGATGATGCTTGGATTGACGAGATGCGTGCTCAAT TACCTCAATTCCCAGCTCAGCGTCGTGCTAAATACGAAGAGGAACTTGGCCTCTCAGCTTATGATGCTAGCCAGCTAACA GCTACCAAAGTCTTGTCAGATTTCTTTGAAACTGCAGTAAGTCTTGGTGGCGATGCCAAGCAAGTCTCTAACTGGTTGCA AGGAGAAGTTGCCCAATTCTTAAATGCAGAAGGCAAAACCATTGAAGAAATCGCTCTGACACCAGAAAATTTGGTGGAGA TGATTGCTATCATTGCTGATGGTACAATCTCTTCTAAAATGGCTAAGAAGGTCTTTGTGCATTTGGCTAAAAACGGTGGC TCAGCACGTGCCTACGTCGAAAAGGCAGGACTTGTTCAGATTTCTGATCCCGCTGTTTTGGTACCAATTATTCACCAAGT CTTTGCTGATAATGAAGCTGCAGTAGCTGATTTCAAATCAGGCAAACGTAATGCTGATAAGGCTTTCACAGGCTTCTTGA TGAAGGCAACCAAAGGTCAAGCTAATCCACAAGTCGCTCAACAATTATTGGCACAAGAATTGCAAAAATTGCGAGATTGA
Upstream 100 bases:
>100_bases CGAAATACGCTGAAGAAACCATCTATCAAGCAGCAGCAGCCTTTGAAGCGGTGACAGATTATCACAAGCAACAACCGATT ATTTTTGGAGGTGACAAGTA
Downstream 100 bases:
>100_bases TAGTTGCTGATAGCAATAAGTTAAAGTATTTTGTCTCTGAAAAAAAGGCGGTCGGTCTTTCACAGGCTGCCTTTTTGTAT GTCATGTTAGTGACCGCCTA
Product: aspartyl/glutamyl-tRNA amidotransferase subunit B
Products: NA
Alternate protein names: Asp/Glu-ADT subunit B [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSFPGVLPVMNKGVIDAGIKAALALNMDIHKEMHFDRKN YFYPDNPKAYQISQFDEPIGYNGWIDIKLEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEQFGTKTELKNLNSFSNVRKGLEFEVERQAKLLRSG GVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPLYEIDDAWIDEMRAQLPQFPAQRRAKYEEELGLSAYDASQLT ATKVLSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKTIEEIALTPENLVEMIAIIADGTISSKMAKKVFVHLAKNGG SARAYVEKAGLVQISDPAVLVPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVAQQLLAQELQKLRD
Sequences:
>Translated_479_residues MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSFPGVLPVMNKGVIDAGIKAALALNMDIHKEMHFDRKN YFYPDNPKAYQISQFDEPIGYNGWIDIKLEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEQFGTKTELKNLNSFSNVRKGLEFEVERQAKLLRSG GVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPLYEIDDAWIDEMRAQLPQFPAQRRAKYEEELGLSAYDASQLT ATKVLSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKTIEEIALTPENLVEMIAIIADGTISSKMAKKVFVHLAKNGG SARAYVEKAGLVQISDPAVLVPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVAQQLLAQELQKLRD >Mature_479_residues MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSFPGVLPVMNKGVIDAGIKAALALNMDIHKEMHFDRKN YFYPDNPKAYQISQFDEPIGYNGWIDIKLEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEQFGTKTELKNLNSFSNVRKGLEFEVERQAKLLRSG GVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPLYEIDDAWIDEMRAQLPQFPAQRRAKYEEELGLSAYDASQLT ATKVLSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKTIEEIALTPENLVEMIAIIADGTISSKMAKKVFVHLAKNGG SARAYVEKAGLVQISDPAVLVPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVAQQLLAQELQKLRD
Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take
COG id: COG0064
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gatB/gatE family. GatB subfamily [H]
Homologues:
Organism=Homo sapiens, GI4758894, Length=494, Percent_Identity=35.0202429149798, Blast_Score=285, Evalue=9e-77, Organism=Caenorhabditis elegans, GI115534094, Length=346, Percent_Identity=34.6820809248555, Blast_Score=206, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6319391, Length=506, Percent_Identity=29.8418972332016, Blast_Score=197, Evalue=2e-51, Organism=Drosophila melanogaster, GI45550808, Length=496, Percent_Identity=31.6532258064516, Blast_Score=250, Evalue=1e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017959 - InterPro: IPR018027 - InterPro: IPR003789 - InterPro: IPR004413 - InterPro: IPR006075 - InterPro: IPR017958 [H]
Pfam domain/function: PF02934 GatB_N; PF02637 GatB_Yqey [H]
EC number: 6.3.5.-
Molecular weight: Translated: 53430; Mature: 53430
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS01234 GATB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSFPGVLPVMNKGVIDAGI CCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCHHHCC KAALALNMDIHKEMHFDRKNYFYPDNPKAYQISQFDEPIGYNGWIDIKLEDGSTKKIRIE CEEEEECCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEEE RAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMRSPEEAYAYLTALKEIIQYTG HHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC ISDVKMEEGSMRVDANISLRPYGQEQFGTKTELKNLNSFSNVRKGLEFEVERQAKLLRSG CCCEEECCCCEEEECCEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHC GVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPLYEIDDAWIDEMRAQLPQFPAQ CCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCHH RRAKYEEELGLSAYDASQLTATKVLSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKT HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC IEEIALTPENLVEMIAIIADGTISSKMAKKVFVHLAKNGGSARAYVEKAGLVQISDPAVL HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHCCEEEECCCEEH VPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVAQQLLAQELQKLRD HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSFPGVLPVMNKGVIDAGI CCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCHHHCC KAALALNMDIHKEMHFDRKNYFYPDNPKAYQISQFDEPIGYNGWIDIKLEDGSTKKIRIE CEEEEECCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEEE RAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMRSPEEAYAYLTALKEIIQYTG HHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC ISDVKMEEGSMRVDANISLRPYGQEQFGTKTELKNLNSFSNVRKGLEFEVERQAKLLRSG CCCEEECCCCEEEECCEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHC GVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPLYEIDDAWIDEMRAQLPQFPAQ CCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCHH RRAKYEEELGLSAYDASQLTATKVLSDFFETAVSLGGDAKQVSNWLQGEVAQFLNAEGKT HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC IEEIALTPENLVEMIAIIADGTISSKMAKKVFVHLAKNGGSARAYVEKAGLVQISDPAVL HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHCCEEEECCCEEH VPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVAQQLLAQELQKLRD HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA