Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 15675575

GI number: 15675575

Start: 1429600

End: 1429983

Strand: Reverse

Name: rimP

Synonym: SPy_1725

Alternate gene names: 15675575

Gene position: 1429983-1429600 (Counterclockwise)

Preceding gene: 15675576

Following gene: 15675574

Centisome position: 77.19

GC content: 38.02

Gene sequence:

>384_bases
ATGGGTAGTGACTACATCCTTAGTATTTTAGTCGATAAGGAAGGTGGAATCACAGTGGAAGATACATCTGACTTGACGAA
TATTATTAGTCCGCTGTTAGATACGATTGATCCAGATCCTTTTCCAAACCAATATATGCTAGAAGTCTCTAGTCCAGGTT
TGGAGCGTCCGCTCAAGACAGCTGACAGTTTAAAAGCAGCAGTTGGCTCTTATATCAATGTGAGTCTTTATCAAGCTATT
GATAAGGTGAAAGTTTTTCAAGGAGACTTATTAGCCTTTGATGGTGAAACGTTGACCATTGATTATCTTGATAAAACACG
TCATAAGATCGTGAATATACCATATCAAGCAGTTGCTAAGGTGAGAATGGCTGTCAAATTATAA

Upstream 100 bases:

>100_bases
AATCAAAATAGCAAATACATCTATTATCGATATCGTAACCAAGACAGTAACGCCTGAGATTAAGGCACCTTATGAATTAG
TAGACGTTGAGTATGACAAA

Downstream 100 bases:

>100_bases
CTTTTATTTCAAAGCACTAAACTTTTTTAGGAACATTTAAGCAAATTTGAAACAACACCTATAGAGTTTATACAAGCTAA
ACAAAAGGAATTAAGGGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MGSDYILSILVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAI
DKVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAKVRMAVKL

Sequences:

>Translated_127_residues
MGSDYILSILVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAI
DKVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAKVRMAVKL
>Mature_126_residues
GSDYILSILVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAID
KVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAKVRMAVKL

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=99, Percent_Identity=40.4040404040404, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_STRP1 (P59819)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_269749.1
- RefSeq:   YP_282776.1
- ProteinModelPortal:   P59819
- SMR:   P59819
- EnsemblBacteria:   EBSTRT00000000384
- EnsemblBacteria:   EBSTRT00000029203
- GeneID:   3571489
- GeneID:   901961
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_1725
- KEGG:   spz:M5005_Spy_1413
- GeneTree:   EBGT00050000026925
- HOGENOM:   HBG668072
- OMA:   ISPDPFP
- ProtClustDB:   PRK00092
- BioCyc:   SPYO160490:SPY1725-MONOMER
- BioCyc:   SPYO293653:M5005_SPY1413-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 13975; Mature: 13844

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSDYILSILVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT
CCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAK
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCHHEECCCHHHHHH
VRMAVKL
HHHHHCC
>Mature Secondary Structure 
GSDYILSILVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKT
CCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHH
ADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAK
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCHHEECCCHHHHHH
VRMAVKL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296