Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is lacR.1 [H]
Identifier: 15675565
GI number: 15675565
Start: 1419077
End: 1419847
Strand: Direct
Name: lacR.1 [H]
Synonym: SPy_1712
Alternate gene names: 15675565
Gene position: 1419077-1419847 (Clockwise)
Preceding gene: 15675556
Following gene: 15675569
Centisome position: 76.61
GC content: 36.19
Gene sequence:
>771_bases ATGTTAAAAAGAGAAAGACTTCTAAAAATTACCGAAATAGTCAATGAGCAAGGTATTGTTACTGTGAATGATATTATTCA GACTTTAAACGTTTCTGATATGACAGTTCGTAGAGACTTAGATGAACTGGAAAAAGCCGGCAAATTGATCCGCATCCATG GAGGTGCACAAAGCATTACCATGCCTAATAAAAAAGAGCGGTCAAATATTGAAAAACAAACCGTTCAAACAAAGGAAAAA TGGGAACTAGCTTCATATGCGACACAACTAGTCAATGATGGTGAAACAATCTTTATTGGTCCAGGAACAACTTTAGAATG TTTCGCTGAGCAGTTAAAAAATCGTCAGATTCGCATTGTGACCAATAGCCTCCCTGTCTTTAACATCCTTCAGGACAGCG AAACCATTGACCTGATTCTTATCGGTGGTGAATACCGATCTATTACAGGAGCTTTTGTAGGGTCCCTTGCCAGTCAAAAT ATCTCATCCTTAAAATTTGCCAAGGCTTTTATTAGCTGTAATGGTATTTATAAAAACGATATTGCAACTTATAGCGAAAC TGAAGGAGAGATTCAAAAGCTAGCTTTTAATAATTCTATTGAAAAATACCTCTTGGTAGATAACCAAAAATTCAATGCCT ACGACTTCTTCATTTTTTACCATTTAAACAACATTGATGCTGTTGTTACAGATTCGCAAATAACTGAGGACGTTATCGAA CGTTATAGTCAGTTCACGCAATTATTAGTAGCCCACGAAAACAAGGAGTAA
Upstream 100 bases:
>100_bases TATGTTTGTTTTTGTTTTGTTTATTTTGTTTTATTGAAATATGAAGGTCTATATGCTATGATAAACATAAGTAAATAAAC TATAGAAAGGAGCCCCTTAG
Downstream 100 bases:
>100_bases CCGTTTCATCAAGAATGGACAGCCTGTCAGTGCATCGTCCTTAAACACCTTCTGGCAAAAGTGATTTGCCCCCAGAGAGG TGTTTTTGTTTTGCTCGGAA
Product: putative lactose phosphotransferase system repressor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MLKRERLLKITEIVNEQGIVTVNDIIQTLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITMPNKKERSNIEKQTVQTKEK WELASYATQLVNDGETIFIGPGTTLECFAEQLKNRQIRIVTNSLPVFNILQDSETIDLILIGGEYRSITGAFVGSLASQN ISSLKFAKAFISCNGIYKNDIATYSETEGEIQKLAFNNSIEKYLLVDNQKFNAYDFFIFYHLNNIDAVVTDSQITEDVIE RYSQFTQLLVAHENKE
Sequences:
>Translated_256_residues MLKRERLLKITEIVNEQGIVTVNDIIQTLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITMPNKKERSNIEKQTVQTKEK WELASYATQLVNDGETIFIGPGTTLECFAEQLKNRQIRIVTNSLPVFNILQDSETIDLILIGGEYRSITGAFVGSLASQN ISSLKFAKAFISCNGIYKNDIATYSETEGEIQKLAFNNSIEKYLLVDNQKFNAYDFFIFYHLNNIDAVVTDSQITEDVIE RYSQFTQLLVAHENKE >Mature_256_residues MLKRERLLKITEIVNEQGIVTVNDIIQTLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITMPNKKERSNIEKQTVQTKEK WELASYATQLVNDGETIFIGPGTTLECFAEQLKNRQIRIVTNSLPVFNILQDSETIDLILIGGEYRSITGAFVGSLASQN ISSLKFAKAFISCNGIYKNDIATYSETEGEIQKLAFNNSIEKYLLVDNQKFNAYDFFIFYHLNNIDAVVTDSQITEDVIE RYSQFTQLLVAHENKE
Specific function: Repressor of the lactose catabolism operon. Galactose-6- phosphate is the inducer [H]
COG id: COG1349
COG function: function code KG; Transcriptional regulators of sugar metabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789829, Length=243, Percent_Identity=31.2757201646091, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI226510968, Length=239, Percent_Identity=29.2887029288703, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1790635, Length=245, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=4e-24, Organism=Escherichia coli, GI1787540, Length=229, Percent_Identity=31.4410480349345, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789059, Length=238, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789519, Length=240, Percent_Identity=28.75, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87082344, Length=223, Percent_Identity=28.6995515695067, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790753, Length=258, Percent_Identity=25.5813953488372, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=27.8969957081545, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=27.8969957081545, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787063, Length=245, Percent_Identity=25.3061224489796, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014036 - InterPro: IPR001034 - InterPro: IPR018356 - InterPro: IPR011991 [H]
Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]
EC number: NA
Molecular weight: Translated: 29055; Mature: 29055
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRERLLKITEIVNEQGIVTVNDIIQTLNVSDMTVRRDLDELEKAGKLIRIHGGAQSIT CCCHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC MPNKKERSNIEKQTVQTKEKWELASYATQLVNDGETIFIGPGTTLECFAEQLKNRQIRIV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEEE TNSLPVFNILQDSETIDLILIGGEYRSITGAFVGSLASQNISSLKFAKAFISCNGIYKND ECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCC IATYSETEGEIQKLAFNNSIEKYLLVDNQKFNAYDFFIFYHLNNIDAVVTDSQITEDVIE CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECHHHHHHHHH RYSQFTQLLVAHENKE HHHHHHHHHHHCCCCC >Mature Secondary Structure MLKRERLLKITEIVNEQGIVTVNDIIQTLNVSDMTVRRDLDELEKAGKLIRIHGGAQSIT CCCHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC MPNKKERSNIEKQTVQTKEKWELASYATQLVNDGETIFIGPGTTLECFAEQLKNRQIRIV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEEE TNSLPVFNILQDSETIDLILIGGEYRSITGAFVGSLASQNISSLKFAKAFISCNGIYKND ECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCC IATYSETEGEIQKLAFNNSIEKYLLVDNQKFNAYDFFIFYHLNNIDAVVTDSQITEDVIE CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECHHHHHHHHH RYSQFTQLLVAHENKE HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2120234; 1901863 [H]