Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is pbpX [H]
Identifier: 15675531
GI number: 15675531
Start: 1380908
End: 1383163
Strand: Reverse
Name: pbpX [H]
Synonym: SPy_1664
Alternate gene names: 15675531
Gene position: 1383163-1380908 (Counterclockwise)
Preceding gene: 15675532
Following gene: 15675530
Centisome position: 74.67
GC content: 37.41
Gene sequence:
>2256_bases ATGAAAAAATGGCAAAAATATGTTTTAGATTATGTTGTGCGCGATAGGAGAACTCCAGTCGAAAATCGCGTTCGAGTTGG ACAAAATATGATGCTCTTAACTATCTTTATTTTCTTTATTTTCATTATTAATTTCATGATTATTATTGGAACAGATCAAA AGTTTGGAGTTAGTTTGTCAGAAGGGGCGAAGAAGGTTTATCAAGAAACCGTTACGATCCAAGCTAAGCGTGGGACCATT TATGATCGAAATGGTACAGCTATTGCAGTGGATTCTACGACTTATAGCATATACGCAATTTTGGATAAATCATTTGTCTC GGCTTCAGATGAAAAGTTATATGTACAACCTTCTCAGTATGAAACAGTAGCTGATATTTTAAAAAAGCATCTGGGAATGA AAAAAACAGATGTAATTAAACAGCTTAAGCGTAAAGGACTTTTCCAAGTCTCGTTTGGACCGTCAGGGTCTGGCATTTCA TATAGTACTATGTCTACTATTCAAAAGGCTATGGAAGATGCCAAAATCAAGGGAATTGCTTTCACAACTAGTCCTGGTCG TATGTATCCAAATGGGACATTTGCTTCAGAATTTATAGGCCTAGCATCTCTAACAGAAGATAAAAAGACAGGTGTTAAGA GTTTAGTTGGAAAAACAGGTCTAGAAGCTTCTTTTGATAAAATTTTATCAGGTCAAGATGGTGTTATTACTTATCAAAAA GATCGAAATGGGACCACACTCTTGGGTACAGGTAAGACTGTCAAGAAAGCTATTGATGGCAAAGATATTTACACAACGCT ATCTGAGCCTATCCAGACCTTCTTAGAAACCCAGATGGATGTTTTTCAAGCCAAATCAAATGGTCAGTTGGCCAGTGCAA CACTTGTTAATGCTAAAACTGGTGAAATTTTGGCAACAACACAACGCCCCACTTATAATGCTGATACTCTGAAAGGACTT GAAAATACGAACTACAAATGGTACAGTGCACTTCATCAAGGAAATTTTGAACCAGGTTCAACCATGAAAGTGATGACTCT GGCAGCGGCTATTGATGATAAAGTTTTCAACCCAAACGAAACCTTTAGCAATGCTAATGGTTTGACAATTGCAGATGCTA CTATTCAAGACTGGTCTATTAACGAAGGCATTTCCACAGGACAGTACATGAATTATGCACAAGGGTTTGCCTTCTCAAGT AACGTTGGGATGACTAAACTTGAACAAAAAATGGGTAATGCAAAATGGATGAATTATTTGACGAAGTTCCGCTTTGGTTT TCCTACTCGTTTTGGTTTAAAAGATGAAGACGCAGGTATATTTCCTTCTGATAATATCGTGACTCAAGCTATGAGCGCTT TTGGTCAAGGGATTTCTGTAACCCAGATTCAAATGCTTAGAGCCTTTACTGCTATTTCTAATAATGGTGAGATGTTAGAG CCACAATTTATCAGTCAAATTTATGATCCTAACACAGCAAGTTTTAGAACGGCAAATAAAGAAATTGTTGGAAAACCTGT ATCAAAAAAAGCCGCTAGTGAAACAAGACAATACATGATTGGTGTAGGAACAGACCCTGAGTTTGGAACACTCTATTCAA AAACATTTGGACCAATTATTAAAGTGGGTGATTTACCTGTTGCTGTTAAATCAGGAACAGCACAAATTGGTTCAGAAGAT GGAAGTGGTTATCAAGATGGTGGATTGACTAACTATGTCTATTCGGTTGTGGCAATGGTGCCAGCTGATAAACCAGACTT TTTGATGTATGTTACTATGACTAAACCACAACATTTTGGTCCCCTTTTTTGGCAAGATGTGGTTAACCCAGTATTGGAAG AAGCATACTTAATGCAAGATACACTAACTAAGCCAGTAGTATCAGATGCTAATCGTCAAACAACTTATAAATTACCAAAC TTTGTAGGAAAGAATCCTGGTGAGACATCAAGCGAGTTGCGTCGAAACCTTGTCCAGCCAGTTGTCCTTGGTACTGGCAG CAAGATCAAAAAAGTATCGCATCAGCCCGGTCAAACGTTAACAGAAAACCAACAAGTTCTCATATTATCAGACCGTTTTG TGGAGGTACCAGACATGTATGGCTGGACAAAATCCAATGTTAAAACCTTTGCTAAATGGACTGGAATAGACATCAGCTTT AAAGGAACAGATTCTGGTCGTGTTATGAAACAAAGTGTTGATGTTGGTAAGTCCTTGAAAAAAATAAAAAAAATGACCAT TACTTTAGGAGATTAA
Upstream 100 bases:
>100_bases AGAAGTAAATGAGTTATCTCGCCGTGATCGTATTATAGATATTGCTGGTAAAGCAGGCTTAAGCAACCGTAATAATAATA TCAAGAAAGTCGAGTAATCT
Downstream 100 bases:
>100_bases CATGTTTTTAACCCTTATTGCAGCAATCATATCCTTTATGGTATCCGCTTTCACAATGCCTTATTTTATCAAATTCTATC AATTGAAAAAAATTGGTGGG
Product: putative penicillin binding protein 2X
Products: NA
Alternate protein names: PBP-2x; PBP2x [H]
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MKKWQKYVLDYVVRDRRTPVENRVRVGQNMMLLTIFIFFIFIINFMIIIGTDQKFGVSLSEGAKKVYQETVTIQAKRGTI YDRNGTAIAVDSTTYSIYAILDKSFVSASDEKLYVQPSQYETVADILKKHLGMKKTDVIKQLKRKGLFQVSFGPSGSGIS YSTMSTIQKAMEDAKIKGIAFTTSPGRMYPNGTFASEFIGLASLTEDKKTGVKSLVGKTGLEASFDKILSGQDGVITYQK DRNGTTLLGTGKTVKKAIDGKDIYTTLSEPIQTFLETQMDVFQAKSNGQLASATLVNAKTGEILATTQRPTYNADTLKGL ENTNYKWYSALHQGNFEPGSTMKVMTLAAAIDDKVFNPNETFSNANGLTIADATIQDWSINEGISTGQYMNYAQGFAFSS NVGMTKLEQKMGNAKWMNYLTKFRFGFPTRFGLKDEDAGIFPSDNIVTQAMSAFGQGISVTQIQMLRAFTAISNNGEMLE PQFISQIYDPNTASFRTANKEIVGKPVSKKAASETRQYMIGVGTDPEFGTLYSKTFGPIIKVGDLPVAVKSGTAQIGSED GSGYQDGGLTNYVYSVVAMVPADKPDFLMYVTMTKPQHFGPLFWQDVVNPVLEEAYLMQDTLTKPVVSDANRQTTYKLPN FVGKNPGETSSELRRNLVQPVVLGTGSKIKKVSHQPGQTLTENQQVLILSDRFVEVPDMYGWTKSNVKTFAKWTGIDISF KGTDSGRVMKQSVDVGKSLKKIKKMTITLGD
Sequences:
>Translated_751_residues MKKWQKYVLDYVVRDRRTPVENRVRVGQNMMLLTIFIFFIFIINFMIIIGTDQKFGVSLSEGAKKVYQETVTIQAKRGTI YDRNGTAIAVDSTTYSIYAILDKSFVSASDEKLYVQPSQYETVADILKKHLGMKKTDVIKQLKRKGLFQVSFGPSGSGIS YSTMSTIQKAMEDAKIKGIAFTTSPGRMYPNGTFASEFIGLASLTEDKKTGVKSLVGKTGLEASFDKILSGQDGVITYQK DRNGTTLLGTGKTVKKAIDGKDIYTTLSEPIQTFLETQMDVFQAKSNGQLASATLVNAKTGEILATTQRPTYNADTLKGL ENTNYKWYSALHQGNFEPGSTMKVMTLAAAIDDKVFNPNETFSNANGLTIADATIQDWSINEGISTGQYMNYAQGFAFSS NVGMTKLEQKMGNAKWMNYLTKFRFGFPTRFGLKDEDAGIFPSDNIVTQAMSAFGQGISVTQIQMLRAFTAISNNGEMLE PQFISQIYDPNTASFRTANKEIVGKPVSKKAASETRQYMIGVGTDPEFGTLYSKTFGPIIKVGDLPVAVKSGTAQIGSED GSGYQDGGLTNYVYSVVAMVPADKPDFLMYVTMTKPQHFGPLFWQDVVNPVLEEAYLMQDTLTKPVVSDANRQTTYKLPN FVGKNPGETSSELRRNLVQPVVLGTGSKIKKVSHQPGQTLTENQQVLILSDRFVEVPDMYGWTKSNVKTFAKWTGIDISF KGTDSGRVMKQSVDVGKSLKKIKKMTITLGD >Mature_751_residues MKKWQKYVLDYVVRDRRTPVENRVRVGQNMMLLTIFIFFIFIINFMIIIGTDQKFGVSLSEGAKKVYQETVTIQAKRGTI YDRNGTAIAVDSTTYSIYAILDKSFVSASDEKLYVQPSQYETVADILKKHLGMKKTDVIKQLKRKGLFQVSFGPSGSGIS YSTMSTIQKAMEDAKIKGIAFTTSPGRMYPNGTFASEFIGLASLTEDKKTGVKSLVGKTGLEASFDKILSGQDGVITYQK DRNGTTLLGTGKTVKKAIDGKDIYTTLSEPIQTFLETQMDVFQAKSNGQLASATLVNAKTGEILATTQRPTYNADTLKGL ENTNYKWYSALHQGNFEPGSTMKVMTLAAAIDDKVFNPNETFSNANGLTIADATIQDWSINEGISTGQYMNYAQGFAFSS NVGMTKLEQKMGNAKWMNYLTKFRFGFPTRFGLKDEDAGIFPSDNIVTQAMSAFGQGISVTQIQMLRAFTAISNNGEMLE PQFISQIYDPNTASFRTANKEIVGKPVSKKAASETRQYMIGVGTDPEFGTLYSKTFGPIIKVGDLPVAVKSGTAQIGSED GSGYQDGGLTNYVYSVVAMVPADKPDFLMYVTMTKPQHFGPLFWQDVVNPVLEEAYLMQDTLTKPVVSDANRQTTYKLPN FVGKNPGETSSELRRNLVQPVVLGTGSKIKKVSHQPGQTLTENQQVLILSDRFVEVPDMYGWTKSNVKTFAKWTGIDISF KGTDSGRVMKQSVDVGKSLKKIKKMTITLGD
Specific function: Penicillin-binding proteins (PBPs) function in the late steps of murein biosynthesis. Beta-lactams inactivate the PBPs by acylating an essential serine residue in the active site of these proteins [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PASTA domains [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=538, Percent_Identity=25.4646840148699, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1786854, Length=565, Percent_Identity=22.3008849557522, Blast_Score=90, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 82801; Mature: 82801
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWQKYVLDYVVRDRRTPVENRVRVGQNMMLLTIFIFFIFIINFMIIIGTDQKFGVSLS CCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHH EGAKKVYQETVTIQAKRGTIYDRNGTAIAVDSTTYSIYAILDKSFVSASDEKLYVQPSQY HHHHHHHHHHEEEEEECCEEEECCCCEEEEECCCEEEEEEEEHHHHCCCCCEEEECCCHH ETVADILKKHLGMKKTDVIKQLKRKGLFQVSFGPSGSGISYSTMSTIQKAMEDAKIKGIA HHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEE FTTSPGRMYPNGTFASEFIGLASLTEDKKTGVKSLVGKTGLEASFDKILSGQDGVITYQK EECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEE DRNGTTLLGTGKTVKKAIDGKDIYTTLSEPIQTFLETQMDVFQAKSNGQLASATLVNAKT CCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC GEILATTQRPTYNADTLKGLENTNYKWYSALHQGNFEPGSTMKVMTLAAAIDDKVFNPNE CCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC TFSNANGLTIADATIQDWSINEGISTGQYMNYAQGFAFSSNVGMTKLEQKMGNAKWMNYL CCCCCCCCEEEECEEECCCCCCCCCCCHHHHHHHCCEEECCCCHHHHHHHHCCHHHHHHH TKFRFGFPTRFGLKDEDAGIFPSDNIVTQAMSAFGQGISVTQIQMLRAFTAISNNGEMLE HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEC PQFISQIYDPNTASFRTANKEIVGKPVSKKAASETRQYMIGVGTDPEFGTLYSKTFGPII HHHHHHHCCCCCCCEECCCHHHCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCEE KVGDLPVAVKSGTAQIGSEDGSGYQDGGLTNYVYSVVAMVPADKPDFLMYVTMTKPQHFG EECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC PLFWQDVVNPVLEEAYLMQDTLTKPVVSDANRQTTYKLPNFVGKNPGETSSELRRNLVQP CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHCC VVLGTGSKIKKVSHQPGQTLTENQQVLILSDRFVEVPDMYGWTKSNVKTFAKWTGIDISF EEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCEECCCCCCCCHHCHHHHHEEECEEEEE KGTDSGRVMKQSVDVGKSLKKIKKMTITLGD ECCCCCHHHHHHHHHHHHHHHHHHHEEEECC >Mature Secondary Structure MKKWQKYVLDYVVRDRRTPVENRVRVGQNMMLLTIFIFFIFIINFMIIIGTDQKFGVSLS CCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHH EGAKKVYQETVTIQAKRGTIYDRNGTAIAVDSTTYSIYAILDKSFVSASDEKLYVQPSQY HHHHHHHHHHEEEEEECCEEEECCCCEEEEECCCEEEEEEEEHHHHCCCCCEEEECCCHH ETVADILKKHLGMKKTDVIKQLKRKGLFQVSFGPSGSGISYSTMSTIQKAMEDAKIKGIA HHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEE FTTSPGRMYPNGTFASEFIGLASLTEDKKTGVKSLVGKTGLEASFDKILSGQDGVITYQK EECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEE DRNGTTLLGTGKTVKKAIDGKDIYTTLSEPIQTFLETQMDVFQAKSNGQLASATLVNAKT CCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC GEILATTQRPTYNADTLKGLENTNYKWYSALHQGNFEPGSTMKVMTLAAAIDDKVFNPNE CCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC TFSNANGLTIADATIQDWSINEGISTGQYMNYAQGFAFSSNVGMTKLEQKMGNAKWMNYL CCCCCCCCEEEECEEECCCCCCCCCCCHHHHHHHCCEEECCCCHHHHHHHHCCHHHHHHH TKFRFGFPTRFGLKDEDAGIFPSDNIVTQAMSAFGQGISVTQIQMLRAFTAISNNGEMLE HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEC PQFISQIYDPNTASFRTANKEIVGKPVSKKAASETRQYMIGVGTDPEFGTLYSKTFGPII HHHHHHHCCCCCCCEECCCHHHCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCEE KVGDLPVAVKSGTAQIGSEDGSGYQDGGLTNYVYSVVAMVPADKPDFLMYVTMTKPQHFG EECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC PLFWQDVVNPVLEEAYLMQDTLTKPVVSDANRQTTYKLPNFVGKNPGETSSELRRNLVQP CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHCC VVLGTGSKIKKVSHQPGQTLTENQQVLILSDRFVEVPDMYGWTKSNVKTFAKWTGIDISF EEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCEECCCCCCCCHHCHHHHHEEECEEEEE KGTDSGRVMKQSVDVGKSLKKIKKMTITLGD ECCCCCHHHHHHHHHHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11463916; 8605631 [H]