Click here to switch to the map view.

The map label for this gene is ypsC [H]

Identifier: 15675517

GI number: 15675517

Start: 1363963

End: 1365117

Strand: Reverse

Name: ypsC [H]

Synonym: SPy_1644

Alternate gene names: 15675517

Gene position: 1365117-1363963 (Counterclockwise)

Preceding gene: 15675518

Following gene: 15675516

Centisome position: 73.69

GC content: 39.39

Gene sequence:

>1155_bases
ATGAAAGAAACATTTAGATTAGTCGCAACTGCAGCCGCAGGTTTAGAAGCTGTCGTTGGTAAAGAAGTCAGAGCACTAGG
CTTTGATTGTCAGGTTGAAAATGGGAAAGTTTATTTTGAAGGTGATGTAGAAGCGATTGTTAAAACAAATCTTTGGTTAC
GTGCAGCAGATCGTATCAAAATTATCGTAGGACAATTTCCTGCTAGAACCTTTGAAGAATTATTCCAAGGTGTCTTTGCC
TTGGATTGGGAAAATTATTTACCGCTAGGAGCTAAATTTCCAATCTCAAAAGCCAAATGTGTTAAGTCTAAATTGCATAA
CGAGCCAAGTGTTCAGGCGATTACCAAAAAGGCCGTTGTTAAGAAACTGCAAAAGCATTTCCACAGGCCAGAAGGAGTTC
CTCTTCAAGAAGTTGGGTCAACGTTTAACATTGAGGTATCTATTTTAAAAGACCAAGCCACTATTATGATTGACACGACA
GGATCTAGCCTATTTAAACGAGGGTATCGCGTTCAAAAAGGTGGAGCACCGATCAAGGAAAATATGGCAGCTGCTATCTT
GGCCTTATCTAACTGGTTTCCAGATAAACCTCTGGTTGATCCCACCTGTGGATCGGGAACGTTTTGCATCGAGGCAGCCA
TGATTGGGATGAATATTGCTCCAGGATTTAACCGTTCGTTTGCTTTTGAAGAATGGAGCTGGGTAGATAAAGATATGGTG
CAACAAGTTCGTGATGATGCTGAACAAGAAGCTAATTATGAAATCGAATTAGATATTTCTGGCTTTGATATCGATGGCCG
CATGATTGAGATTGCTAAAAGTAATGCTGAAGAAGCTGGTTTATCTGATGTGATTACCTTTAAGCAAATGCGTCTGCAAG
ACTTTCGAACAGACAAGGTTAATGGTGTAGTGATATCAAATCCTCCTTATGGAGAACGGTTGCTTGATGACAAAGCGGTT
GACATCTTGTATAATGAAATGGGACAAACCTTTGCACCATTGAAAACATGGAGCAAATTTATCCTTACAAGTGATGAACT
TTTTGAACTAAAATACGGGCAAAAAGCTGATAAAAAACGTAAACTTTATAACGGCACCCTAAAAGTTGATTTGTACCAAT
TTTATGGGGAAAGGGTAAAGCGACATCTGATATAG

Upstream 100 bases:

>100_bases
TTCCTAGTTATTTCCGGAACAAAACATGGCTTATAGAAAATTGCATAATAGGTTAAGCTAGCATTTGCTAGCTTTTATTT
GATTTAAAAGAAAGAGATAT

Downstream 100 bases:

>100_bases
AGAGGTAGTAAGCGTGTCAGAAGAAAGCAAAGAAGTCGAAGTAACAAAAGAATCGCAAACATTGGGGCTTAATGAAGCCA
AGTCAATGACAATTGGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWSKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI

Sequences:

>Translated_384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWSKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI
>Mature_384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWSKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=350, Percent_Identity=34.2857142857143, Blast_Score=181, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43232; Mature: 43232

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIK
CCCHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCEEEEECCCEEEEECCEEEEECCEEE
IIVGQFPARTFEELFQGVFALDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVV
EEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
KKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTTGSSLFKRGYRVQKGGAPIKE
HHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCEEEEEECCCHHHHHCCCEEECCCCCHHH
NMAAAILALSNWFPDKPLVDPTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCHHCCCCHHHH
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKV
HHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
NGVVISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDELFELKYGQKADKKR
CEEEECCCCCCCHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHEEECCCCCCHHHH
KLYNGTLKVDLYQFYGERVKRHLI
HHHCCEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIK
CCCHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCEEEEECCCEEEEECCEEEEECCEEE
IIVGQFPARTFEELFQGVFALDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVV
EEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
KKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTTGSSLFKRGYRVQKGGAPIKE
HHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCEEEEEECCCHHHHHCCCEEECCCCCHHH
NMAAAILALSNWFPDKPLVDPTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCHHCCCCHHHH
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKV
HHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
NGVVISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDELFELKYGQKADKKR
CEEEECCCCCCCHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHEEECCCCCCHHHH
KLYNGTLKVDLYQFYGERVKRHLI
HHHCCEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]