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The map label for this gene is yncI [H]

Identifier: 15675465

GI number: 15675465

Start: 1296969

End: 1298102

Strand: Direct

Name: yncI [H]

Synonym: SPy_1574

Alternate gene names: 15675465

Gene position: 1296969-1298102 (Clockwise)

Preceding gene: 15675446

Following gene: 15675466

Centisome position: 70.01

GC content: 38.18

Gene sequence:

>1134_bases
ATGATTGATTTTATTATTTCTATTGATGATTGCGCAGTTGAATTGGATAGTCGTCAATCTTGGAAAATTCGCTACCCCTT
ATCAACCATTCTATTTCTTGGCTTTCGTTGGCAAGTAGCTGGCATTGAAACCTGGAAGGAGATGGAAGATTTTATTGAAA
TGAATGAACCATTGTTTGCGACCTACGTTGATTTGAGTGAAGGTTGTCCGTCTCATGATACCTTAGAGCGTGTGATTAGT
CTTGTTAATTCAGACCGTTTAAAAGAGCTTAAAGTTCAATTTGAGCAATCATTGACAAGCTTAGATGCCGTTCATCAACT
GATTTCAGTGGACGGTAAAACGATTCGAGGCAATCGAGGTAAAAATCAGAAGCCTGTTCATATTGTAACGGCTTATGATG
GGGGTCATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGCCATCCCTCAGCTATTGCGG
ACAATTGATATCCGTAAAAGCATTGTAACGATAGACGCAATGGGCACGCAGACGGCTATCGTTGATACGATTATAAAAGG
TAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAGAAACACTTTATGATGATATTGCTCTTTATTTTAGTGATGTCA
ACTTATTGGAAGAACTCCAAGAAAATGCACAGTATTATCAGACTGTTGAAAAATCTAGGGGACAGATTGAAGTTAGAGAA
TACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAATTATCCCAAATGGCATAAGTTACGTGGTATTGGGATGACTCG
TAACACGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTTAAGCCGGATGTCCTCACAT
TTGCCAATTGTGTACGAGGTCATTGGCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCATCAT
CAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGAAAAATGTGCTTATATTTTCTCAAAGTGATGGTATT
TCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATTTAGTCCAATTATTTG
GAGAAAGAGGCTAA

Upstream 100 bases:

>100_bases
AATCTCACGCCAAACGCATGAAGAAACTTTTGTTTTCAGAAAACTAGATTCATAATGACAAAATCAATCAAAGTAGTACA
CTATAGATGAGGTGACTACG

Downstream 100 bases:

>100_bases
GCAGATGATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGAAGAGAAAGTTTTCATGCGTA
CGGCGTGTAGACAATCTAGG

Product: IS1548 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG

Sequences:

>Translated_377_residues
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG
>Mature_377_residues
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVIS
LVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLR
TIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
YWVSSDIKWLCQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHH
QTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=370, Percent_Identity=34.0540540540541, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1789896, Length=371, Percent_Identity=33.4231805929919, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1786924, Length=232, Percent_Identity=36.6379310344828, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 43912; Mature: 43912

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMEDFIEMNEPLFA
CEEEEEEECHHEEEECCCCCEEEECCHHHHHHHHEEEEECCHHHHHHHHHHHHCCCCEEE
TYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRG
EEEEHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
KNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAI
CCCCCEEEEEEECCCCEEECCCEEEECCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHH
VDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YWVSSDIKWLCQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HHHCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRY
CEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHE
ISVHLEDYLVQLFGERG
EEEEHHHHHHHHHCCCC
>Mature Secondary Structure
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMEDFIEMNEPLFA
CEEEEEEECHHEEEECCCCCEEEECCHHHHHHHHEEEEECCHHHHHHHHHHHHCCCCEEE
TYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTSLDAVHQLISVDGKTIRGNRG
EEEEHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
KNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAI
CCCCCEEEEEEECCCCEEECCCEEEECCCCCEEEHHHHHHHHHHHHHEEEEECCCCHHHH
VDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVRE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YWVSSDIKWLCQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HHHCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRY
CEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHE
ISVHLEDYLVQLFGERG
EEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]