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The map label for this gene is sodA

Identifier: 15675326

GI number: 15675326

Start: 1164948

End: 1165553

Strand: Reverse

Name: sodA

Synonym: SPy_1406

Alternate gene names: 15675326

Gene position: 1165553-1164948 (Counterclockwise)

Preceding gene: 15675327

Following gene: 15675325

Centisome position: 62.92

GC content: 39.6

Gene sequence:

>606_bases
ATGGCTATTATTTTACCAGAACTTCCATACGCGTATGATGCTCTTGAACCACAGTTTGATGCGGAGACAATGACTCTTCA
TCATGATAAACACCATGCCACTTATGTCGCTAATACCAATGCGGCTTTAGAAAAACACCCAGAGATCGGAGAAAATCTGG
AGGAACTATTGGCAGATGTCACTAAGATTCCAGAAGATATTCGTCAAACCTTAATTAATAATGGTGGCGGACACCTAAAC
CATGCGCTTTTCTGGGAACTATTATCACCTGAAAAACAAGACGTCACTCCTGATGTTGCACAAGCCATTGATGATGCTTT
TGGGTCATTTGACGCCTTTAAAGAACAATTTACAGCAGCTGCTACTGGACGTTTTGGTTCAGGTTGGGCATGGTTAGTTG
TTAATAAAGAAGGACAACTCGAAATCACATCAACCGCTAACCAAGATACTCCAATTTCAGAAGGCAAAAAACCAATTCTA
GCGCTTGATGTGTGGGAGCATGCTTACTACTTGAATTATCGTAATGTACGTCCAAATTATATCAAAGCTTTCTTTGAAAT
CGTTAATTGGAAAAAAGTATCAGAACTTTACCAAGCCGCTAAATAA

Upstream 100 bases:

>100_bases
ATAGGCGTTGGACCGCTTTCCAAGAGATAATCAAATTAGTTGAAAGCTCTTATTTTTTGCGATAAGATAGACGTATCATA
AAGGAAAAGAGGACAGGAAA

Downstream 100 bases:

>100_bases
GAAAAGGGTTTCCAATCTCAAAAAGAGATTGGTTTTTTAAGTGCTTTTGTGAATAACAGTGTGGGGACATCATTTTTTAG
AAAAGATAAAAATAGTTTGT

Product: superoxide dismutase (Fe/Mn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MAIILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADVTKIPEDIRQTLINNGGGHLN
HALFWELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKEGQLEITSTANQDTPISEGKKPIL
ALDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQAAK

Sequences:

>Translated_201_residues
MAIILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADVTKIPEDIRQTLINNGGGHLN
HALFWELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKEGQLEITSTANQDTPISEGKKPIL
ALDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQAAK
>Mature_200_residues
AIILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADVTKIPEDIRQTLINNGGGHLNH
ALFWELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKEGQLEITSTANQDTPISEGKKPILA
LDVWEHAYYLNYRNVRPNYIKAFFEIVNWKKVSELYQAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Secreted

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=49.7536945812808, Blast_Score=185, Evalue=2e-47,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=49.7536945812808, Blast_Score=185, Evalue=2e-47,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=44, Blast_Score=150, Evalue=5e-37,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=50.4807692307692, Blast_Score=207, Evalue=3e-55,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=44.8979591836735, Blast_Score=174, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=43.0693069306931, Blast_Score=163, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=42.5, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=40.0966183574879, Blast_Score=145, Evalue=5e-36,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=45.5, Blast_Score=172, Evalue=2e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_STRP1 (P0C0I1)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_269500.1
- RefSeq:   YP_282508.1
- ProteinModelPortal:   P0C0I1
- SMR:   P0C0I1
- EnsemblBacteria:   EBSTRT00000001231
- EnsemblBacteria:   EBSTRT00000027543
- GeneID:   3571769
- GeneID:   901469
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_1406
- KEGG:   spz:M5005_Spy_1145
- GeneTree:   EBGT00050000027651
- HOGENOM:   HBG507761
- OMA:   WDEVARR
- ProtClustDB:   CLSK877206
- BioCyc:   SPYO160490:SPY1406-MONOMER
- BioCyc:   SPYO293653:M5005_SPY1145-MONOMER
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 22684; Mature: 22552

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV
CEEEECCCCCHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHH
TKIPEDIRQTLINNGGGHLNHALFWELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAA
HHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
ATGRFGSGWAWLVVNKEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNY
HCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHEEEEECCCCCHHH
IKAFFEIVNWKKVSELYQAAK
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV
EEEECCCCCHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHH
TKIPEDIRQTLINNGGGHLNHALFWELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAA
HHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
ATGRFGSGWAWLVVNKEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNY
HCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHEEEEECCCCCHHH
IKAFFEIVNWKKVSELYQAAK
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296