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The map label for this gene is yhcF [H]

Identifier: 15675238

GI number: 15675238

Start: 1062332

End: 1062703

Strand: Direct

Name: yhcF [H]

Synonym: SPy_1285

Alternate gene names: 15675238

Gene position: 1062332-1062703 (Clockwise)

Preceding gene: 15675227

Following gene: 15675239

Centisome position: 57.35

GC content: 37.37

Gene sequence:

>372_bases
ATGTCTTGGAAATTTGAGGAAAAATCTCCTATTTATGCGCAGATAGCACAACATGTCATGATGCAAATTATTAGCCAAGA
AATCAAGAGTGGTGATCAACTTCCAACTGTTCGTGAATATGCAGAAATCGCAGGTGTTAATCCTAACACCATGCAACGAG
CGTTTACAGAACTTGAACGGGAAGGAATGGTTTATTCGCAACGTACTGCTGGCCGTTTTGTAACTGACGATCAAAAATTA
ATTGCTCGTAAAAGACGAGAGTTAGCAATTAGTGAATTAGAATCATTTATCACCAATATGACAAAAATGGGATTTAGTCA
CACTGAGATTATCCCTGTTTTGACGAGCTTTTTAAAGGAGGATTCACAATAA

Upstream 100 bases:

>100_bases
TTCTCAAAGAGTGAAAAATGGCATAAAACTTGACATTCCCTTTTTTTTTCTGTACCATTTAATTAGTACAAATATCTATA
TTACTCAGAAAGGAGACCAC

Downstream 100 bases:

>100_bases
TGGCACACCTATTGCAACTACATCATGTTTCAAAATCTTACCGTGAAAAAAAAGCTATTGATGACTTAACCATTACTATC
CCGAACGGTAAAATTATCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSWKFEEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKL
IARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ

Sequences:

>Translated_123_residues
MSWKFEEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKL
IARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>Mature_122_residues
SWKFEEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLI
ARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14205; Mature: 14074

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWKFEEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
EGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKE
HCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
DSQ
CCC
>Mature Secondary Structure 
SWKFEEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
EGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKE
HCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
DSQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]