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The map label for this gene is yvoA [H]

Identifier: 15675167

GI number: 15675167

Start: 985090

End: 985815

Strand: Reverse

Name: yvoA [H]

Synonym: SPy_1202

Alternate gene names: 15675167

Gene position: 985815-985090 (Counterclockwise)

Preceding gene: 15675168

Following gene: 15675166

Centisome position: 53.22

GC content: 39.26

Gene sequence:

>726_bases
ATGAATAACCGACTTGAGGAGTGTGGCATGTTACCAGCTTATATAAAAATTCATGATGCAATTAAAAAAGACATTGATCT
GGGCATCTGGCCAATTGGTAGTCGCTTACCAAGTGAACGACATTTAGCGGAACATTTCACCGTTAGTCGAATGACTCTAC
GGCAGGCTATTACATTACTAGTAGAAGAAGGGATTCTTGAAAGGCGGATAGGAAGTGGTACTTATGTTGCCAGTCATCGT
GTTCAAGAAAAAATGCGAGGAACAACAAGTTTCACAGAAATTATACGCTCCCAAGGACGACAACCCTCCTCTAAATTATT
ATCCTATCAAAAGCAATTAGCTAGTGATACCGAAGTTAAAGAATTGAACTTAGACAAAACAGACTTGGTCATTCGAATGG
AACGTATCCGCTATGCAGACAGTGTCCCTTTGGTGTACGAAATTGCTTCAATCCCAGAAAAATTTATAAAAACGGTTAAA
CGAGCTGATATTACAGAACACTTTTTTCACTCATTGATAGCAAATGGTTACGAGATTGGTAAAAGTAAACAGACAATCTA
CGCTAAGCTAGCAAGTGAGCGTGTAGCCTCCTACTTGGAAGTTGCTAAAGGACATGCCATTTTGGCTCTAACTCAGGTGT
CTTACTTTACAGACGGCAAACCTTTTGAGTATGTCCGCAGTCAGTATATCGGTGACCGTTTTGAATTTTACTTAGAAAAT
AATTAG

Upstream 100 bases:

>100_bases
CCACCAAATTCACCGGTTATTGTCGCAGGTAATATCATTAATTGATGCCAAATACCTCAATATTTACAATTCAATTTTCA
TCAAAAATATGATAAAATAG

Downstream 100 bases:

>100_bases
TAAAGAAGTCATTTATGACTTCCTTTTTTACACGAACAGCACAAGGCAATTAATTTGCTACTGTTAAAAACAATCATAGT
ATGATAAAATGAACATTATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNNRLEECGMLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHR
VQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVK
RADITEHFFHSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLEN
N

Sequences:

>Translated_241_residues
MNNRLEECGMLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHR
VQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVK
RADITEHFFHSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLEN
N
>Mature_241_residues
MNNRLEECGMLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLLVEEGILERRIGSGTYVASHR
VQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVKELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVK
RADITEHFFHSLIANGYEIGKSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLEN
N

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=30.6034482758621, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1790118, Length=212, Percent_Identity=28.3018867924528, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082252, Length=212, Percent_Identity=25.9433962264151, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788418, Length=239, Percent_Identity=23.0125523012552, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790540, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27665; Mature: 27665

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRLEECGMLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLL
CCCCHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VEEGILERRIGSGTYVASHRVQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
ELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFFHSLIANGYEIG
HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHCC
KSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLEN
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCEEEEECC
N
C
>Mature Secondary Structure
MNNRLEECGMLPAYIKIHDAIKKDIDLGIWPIGSRLPSERHLAEHFTVSRMTLRQAITLL
CCCCHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VEEGILERRIGSGTYVASHRVQEKMRGTTSFTEIIRSQGRQPSSKLLSYQKQLASDTEVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
ELNLDKTDLVIRMERIRYADSVPLVYEIASIPEKFIKTVKRADITEHFFHSLIANGYEIG
HCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHCC
KSKQTIYAKLASERVASYLEVAKGHAILALTQVSYFTDGKPFEYVRSQYIGDRFEFYLEN
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCEEEEECC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]