Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 15675151

GI number: 15675151

Start: 968835

End: 969530

Strand: Reverse

Name: ydhC [H]

Synonym: SPy_1179

Alternate gene names: 15675151

Gene position: 969530-968835 (Counterclockwise)

Preceding gene: 15675152

Following gene: 15675150

Centisome position: 52.34

GC content: 35.49

Gene sequence:

>696_bases
ATGAATCCTATTATCGAAGCCGTTAAACAAAATCTTGACCTATTAAGAAATATCCCTTTGAAAATAGCCTTTTATAACGC
TCTTAAAAAGACCATTATTTTGCGACAAATTCCTGTTGGAAGCCGCATTAATGAAAAAGAGTTTTCCATTGCGCTTAATA
TTAGCAGGACACCTATTCGCTACGCTTTGGGATTATTGTCTGAAGAACACCTTGTAGAGCACATTCCTAAAAAAGGCATT
ATTGTCAAAGGAGTTAGTATCAAGGATGCCTGTGAAATTTTTGAAATTCGAAAAGCTCTAGAGACTCTCGCAACAGTGCA
AGCGATGCATTTAATGACAGAAGAAGATTTTAAAGTCATGCATAACTTGTTGGAAGACTGTGAAACCTTTATCGCAGAGG
ATGACACCAATCGTATTTTGGATAATTTTAATGCCTTTAACAATTTGATTTACAGCTATAGCCAAATGGTCCGCTTAAAA
GAAATTGTGACAGAATTGCAAGCTTATTTGGTCTACTTTAGAAAAATTTCGATTTCTTCAGTTGAACGCCGTAAACGAGC
TCTATCTGAACACTGGATGATTTACCGAGGTATGAAGAACAAAGATCATGAGCAAATTACGTTGATTACACATGAACACT
TGAATAGCTCACTTGAATTTATCTTAAAAGAAATGAGGCCTGAGCAAAATGACTAA

Upstream 100 bases:

>100_bases
GTGAGCATGGCTTTAATTTTTCAGAACTCATCTAGTCCTATTGGAATGTTTCACAAATTTAAGTATAATAAAGTGAGGAC
ACTAGCATTAAGGAGATGAC

Downstream 100 bases:

>100_bases
GGCAGTTCTAACAAGTATTAGTCAACTGGCCTTAAAAGCTTTGCTTTATGAAGTCTCACTATCTCCAAAACCTGGTTTAG
TTGATCGATTTGATAACGGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNPIIEAVKQNLDLLRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQAYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND

Sequences:

>Translated_231_residues
MNPIIEAVKQNLDLLRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQAYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
>Mature_231_residues
MNPIIEAVKQNLDLLRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIRYALGLLSEEHLVEHIPKKGI
IVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVMHNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLK
EIVTELQAYLVYFRKISISSVERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=23.0046948356808, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27027; Mature: 27027

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIIEAVKQNLDLLRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIR
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
YALGLLSEEHLVEHIPKKGIIVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVM
HHHHHHCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLKEIVTELQAYLVYFRKISISS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNPIIEAVKQNLDLLRNIPLKIAFYNALKKTIILRQIPVGSRINEKEFSIALNISRTPIR
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
YALGLLSEEHLVEHIPKKGIIVKGVSIKDACEIFEIRKALETLATVQAMHLMTEEDFKVM
HHHHHHCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNLLEDCETFIAEDDTNRILDNFNAFNNLIYSYSQMVRLKEIVTELQAYLVYFRKISISS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VERRKRALSEHWMIYRGMKNKDHEQITLITHEHLNSSLEFILKEMRPEQND
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]